Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_D18
         (444 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy...   148   3e-37
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    27   1.3  
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo...    27   1.7  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    26   3.0  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    25   4.0  
SPCC613.03 |||conserved fungal protein|Schizosaccharomyces pombe...    25   4.0  
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb...    24   9.1  

>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score =  148 bits (359), Expect = 3e-37
 Identities = 66/110 (60%), Positives = 84/110 (76%)
 Frame = +1

Query: 94  VKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGLVKYMSS 273
           VKPD VQRGL+G II +FE KG+KL  LKF+ PS +L+++HY++   +PF+  LV +M+S
Sbjct: 10  VKPDAVQRGLIGYIISKFELKGYKLRALKFLVPSRDLVEEHYAEHKGKPFYEKLVGFMAS 69

Query: 274 GPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGS 423
           GPV  M+WEG   VKTGR MLGA+NP DS PGTIRGD  I +GRN+ HGS
Sbjct: 70  GPVCAMIWEGKQAVKTGRLMLGASNPLDSAPGTIRGDYGIDLGRNVCHGS 119


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 161 KPFFSKRSIMVPTRPRCTPSGLTNNKSTLTLFRHHEILL 45
           KPF +KRS ++P RP  T   L+ +          EI+L
Sbjct: 512 KPFVNKRSKVLPLRPSVTHDNLSKSSDYSKNEVEREIML 550


>SPAC1039.07c |||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
 Frame = +1

Query: 253 LVKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQP--GTIRGDLCIQVGR--NIIHG 420
           L++     P++  V  GL +++ G ++   T+P+      GT+ GD C+++G   NI+H 
Sbjct: 349 LLRLKDKHPLIVDV-RGLGLLQ-GIEIASCTDPSKPSDFLGTVIGDKCLELGMNCNIVHL 406

Query: 421 SG 426
            G
Sbjct: 407 RG 408


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 353 AGLVAPSI*RPVFTTLRPSHTIGTTGPELMYFTRPGKKGR 234
           +G + P   RP  T+L P  T+ TT   +    RP  K +
Sbjct: 358 SGSLTPLSSRPAHTSLPPIPTVQTTSSNVPPVNRPSLKSK 397


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -2

Query: 173 PTSLKPFFSKRSIMVPTRPRCTPSGLTNNKSTLTLFRHHEILLTCS 36
           P+  +P FS+R  +  TR RC  S     K    L ++H+ LL  S
Sbjct: 101 PSFAQPHFSERQSVDKTRSRCL-SRNRRRKRHPNLHKNHQRLLGMS 145


>SPCC613.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 189

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 158 PFFSKRSIMVPTRPRCTPSGLTNNKSTLTLF 66
           PF  K  ++V    +C PSG  N + TL  F
Sbjct: 71  PFVKKNEVLVDVLKKCDPSG--NRRITLDEF 99


>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 574

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 283 VPMVWEGLNVVKTGRQMLGATNP 351
           +  V EG N +  GRQ+L  T+P
Sbjct: 388 ITWVSEGANTMDRGRQLLEVTHP 410


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,845,260
Number of Sequences: 5004
Number of extensions: 35816
Number of successful extensions: 87
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)