Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_D16
(455 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR533465-1|CAG38496.1| 105|Homo sapiens RPL36 protein. 124 1e-28
BC091508-1|AAH91508.1| 105|Homo sapiens ribosomal protein L36 p... 124 1e-28
BC004971-1|AAH04971.1| 105|Homo sapiens ribosomal protein L36 p... 124 1e-28
BC003052-1|AAH03052.1| 105|Homo sapiens ribosomal protein L36 p... 124 1e-28
AB061833-1|BAB79471.1| 105|Homo sapiens ribosomal protein L36 p... 124 1e-28
AB046410-1|BAB21256.1| 32|Homo sapiens ribosomal protein L36 p... 64 3e-10
U93871-1|AAB68767.1| 400|Homo sapiens RaP2 interacting protein ... 29 5.7
CR456748-1|CAG33029.1| 405|Homo sapiens RPIP8 protein. 29 5.7
BX537443-1|CAD97685.1| 400|Homo sapiens hypothetical protein pr... 29 5.7
BC008833-1|AAH08833.1| 425|Homo sapiens coiled-coil domain cont... 29 5.7
BC006194-1|AAH06194.1| 405|Homo sapiens RaP2 interacting protei... 29 5.7
AK000298-1|BAA91065.1| 425|Homo sapiens protein ( Homo sapiens ... 29 5.7
AF055026-1|AAC09366.1| 405|Homo sapiens RaP2 interacting protei... 29 5.7
AB209802-1|BAD93039.1| 481|Homo sapiens RaP2 interacting protei... 29 5.7
L34600-1|AAA67038.1| 727|Homo sapiens initiation factor 2 protein. 29 10.0
AF495546-1|AAM70196.1| 727|Homo sapiens translation initiation ... 29 10.0
AF494407-1|AAM14617.1| 727|Homo sapiens mitochondrial translati... 29 10.0
>CR533465-1|CAG38496.1| 105|Homo sapiens RPL36 protein.
Length = 105
Score = 124 bits (299), Expect = 1e-28
Identities = 64/97 (65%), Positives = 76/97 (78%), Gaps = 5/97 (5%)
Frame = +2
Query: 86 LKYPAG---RKG--ITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLK 250
L+YP KG +T + R +R +G TKH+KFVRD++REV G A YE+RAMELLK
Sbjct: 3 LRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLK 62
Query: 251 VSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 361
VSKDKRALKF+K+R+GTHIRAKRKREELSNVLA MRK
Sbjct: 63 VSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99
>BC091508-1|AAH91508.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 124 bits (299), Expect = 1e-28
Identities = 64/97 (65%), Positives = 76/97 (78%), Gaps = 5/97 (5%)
Frame = +2
Query: 86 LKYPAG---RKG--ITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLK 250
L+YP KG +T + R +R +G TKH+KFVRD++REV G A YE+RAMELLK
Sbjct: 3 LRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLK 62
Query: 251 VSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 361
VSKDKRALKF+K+R+GTHIRAKRKREELSNVLA MRK
Sbjct: 63 VSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99
>BC004971-1|AAH04971.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 124 bits (299), Expect = 1e-28
Identities = 64/97 (65%), Positives = 76/97 (78%), Gaps = 5/97 (5%)
Frame = +2
Query: 86 LKYPAG---RKG--ITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLK 250
L+YP KG +T + R +R +G TKH+KFVRD++REV G A YE+RAMELLK
Sbjct: 3 LRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLK 62
Query: 251 VSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 361
VSKDKRALKF+K+R+GTHIRAKRKREELSNVLA MRK
Sbjct: 63 VSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99
>BC003052-1|AAH03052.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 124 bits (299), Expect = 1e-28
Identities = 64/97 (65%), Positives = 76/97 (78%), Gaps = 5/97 (5%)
Frame = +2
Query: 86 LKYPAG---RKG--ITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLK 250
L+YP KG +T + R +R +G TKH+KFVRD++REV G A YE+RAMELLK
Sbjct: 3 LRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLK 62
Query: 251 VSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 361
VSKDKRALKF+K+R+GTHIRAKRKREELSNVLA MRK
Sbjct: 63 VSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99
>AB061833-1|BAB79471.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 124 bits (299), Expect = 1e-28
Identities = 64/97 (65%), Positives = 76/97 (78%), Gaps = 5/97 (5%)
Frame = +2
Query: 86 LKYPAG---RKG--ITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLK 250
L+YP KG +T + R +R +G TKH+KFVRD++REV G A YE+RAMELLK
Sbjct: 3 LRYPMAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLK 62
Query: 251 VSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 361
VSKDKRALKF+K+R+GTHIRAKRKREELSNVLA MRK
Sbjct: 63 VSKDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99
>AB046410-1|BAB21256.1| 32|Homo sapiens ribosomal protein L36
protein.
Length = 32
Score = 63.7 bits (148), Expect = 3e-10
Identities = 29/32 (90%), Positives = 32/32 (100%)
Frame = +2
Query: 245 LKVSKDKRALKFLKRRLGTHIRAKRKREELSN 340
LKVSKDKRALKF+K+R+GTHIRAKRKREELSN
Sbjct: 1 LKVSKDKRALKFIKKRVGTHIRAKRKREELSN 32
>U93871-1|AAB68767.1| 400|Homo sapiens RaP2 interacting protein 8
protein.
Length = 400
Score = 29.5 bits (63), Expect = 5.7
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = +2
Query: 71 KATKQLKYPAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 241
K ++ + +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 248 KMEQKFRIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 303
>CR456748-1|CAG33029.1| 405|Homo sapiens RPIP8 protein.
Length = 405
Score = 29.5 bits (63), Expect = 5.7
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = +2
Query: 71 KATKQLKYPAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 241
K ++ + +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 253 KMEQKFRIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 308
>BX537443-1|CAD97685.1| 400|Homo sapiens hypothetical protein
protein.
Length = 400
Score = 29.5 bits (63), Expect = 5.7
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = +2
Query: 71 KATKQLKYPAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 241
K ++ + +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 248 KMEQKFRIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 303
>BC008833-1|AAH08833.1| 425|Homo sapiens coiled-coil domain
containing 49 protein.
Length = 425
Score = 29.5 bits (63), Expect = 5.7
Identities = 21/76 (27%), Positives = 37/76 (48%)
Frame = +2
Query: 95 PAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRAL 274
P+G + D A +IR L ++ K + REV+ + K+ ELL++S +K+
Sbjct: 121 PSGANSLLDMASKIREDPLFIIRKKEE----EKKREVLNNPVKMKKIKELLQMSLEKKEK 176
Query: 275 KFLKRRLGTHIRAKRK 322
K K + H + K +
Sbjct: 177 KKKKEKKKKHKKHKHR 192
>BC006194-1|AAH06194.1| 405|Homo sapiens RaP2 interacting protein 8
protein.
Length = 405
Score = 29.5 bits (63), Expect = 5.7
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = +2
Query: 71 KATKQLKYPAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 241
K ++ + +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 253 KMEQKFRIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 308
>AK000298-1|BAA91065.1| 425|Homo sapiens protein ( Homo sapiens
cDNA FLJ20291 fis, clone HEP04788. ).
Length = 425
Score = 29.5 bits (63), Expect = 5.7
Identities = 21/76 (27%), Positives = 37/76 (48%)
Frame = +2
Query: 95 PAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRAL 274
P+G + D A +IR L ++ K + REV+ + K+ ELL++S +K+
Sbjct: 121 PSGANSLLDMASKIREDPLFIIRKKEE----EKKREVLNNPVKMKKIKELLQMSLEKKEK 176
Query: 275 KFLKRRLGTHIRAKRK 322
K K + H + K +
Sbjct: 177 KKKKEKKKKHKKHKHR 192
>AF055026-1|AAC09366.1| 405|Homo sapiens RaP2 interacting protein 8
protein.
Length = 405
Score = 29.5 bits (63), Expect = 5.7
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = +2
Query: 71 KATKQLKYPAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 241
K ++ + +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 253 KMEQKFRIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 308
>AB209802-1|BAD93039.1| 481|Homo sapiens RaP2 interacting protein 8
variant protein.
Length = 481
Score = 29.5 bits (63), Expect = 5.7
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = +2
Query: 71 KATKQLKYPAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 241
K ++ + +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 288 KMEQKFRIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 343
>L34600-1|AAA67038.1| 727|Homo sapiens initiation factor 2 protein.
Length = 727
Score = 28.7 bits (61), Expect = 10.0
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = +2
Query: 167 KHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVL 346
K K RE GH ++KR++ L+FL+R+ ++ K KRE SNVL
Sbjct: 468 KEHKEAHQKAREKYGHLLWKKRSI-----------LRFLERKEQIPLKPKEKRERDSNVL 516
Query: 347 AQMRK 361
+ + K
Sbjct: 517 SVIIK 521
>AF495546-1|AAM70196.1| 727|Homo sapiens translation initiation
factor 2 protein.
Length = 727
Score = 28.7 bits (61), Expect = 10.0
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = +2
Query: 167 KHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVL 346
K K RE GH ++KR++ L+FL+R+ ++ K KRE SNVL
Sbjct: 468 KEHKEAHQKAREKYGHLLWKKRSI-----------LRFLERKEQIPLKPKEKRERDSNVL 516
Query: 347 AQMRK 361
+ + K
Sbjct: 517 SVIIK 521
>AF494407-1|AAM14617.1| 727|Homo sapiens mitochondrial
translation-initiation factor 2 protein.
Length = 727
Score = 28.7 bits (61), Expect = 10.0
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = +2
Query: 167 KHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVL 346
K K RE GH ++KR++ L+FL+R+ ++ K KRE SNVL
Sbjct: 468 KEHKEAHQKAREKYGHLLWKKRSI-----------LRFLERKEQIPLKPKEKRERDSNVL 516
Query: 347 AQMRK 361
+ + K
Sbjct: 517 SVIIK 521
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,398,959
Number of Sequences: 237096
Number of extensions: 977139
Number of successful extensions: 2097
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2097
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3815180866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -