Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_D16
(455 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00033-6|AAC48295.2| 104|Caenorhabditis elegans Ribosomal prote... 102 1e-22
Z81589-9|CAJ85769.1| 926|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z81589-8|CAB04720.1| 923|Caenorhabditis elegans Hypothetical pr... 29 1.2
AC006651-7|AAX22287.1| 786|Caenorhabditis elegans Hypothetical ... 29 1.2
AC006651-6|AAF39868.1| 833|Caenorhabditis elegans Hypothetical ... 29 1.2
AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical... 29 1.6
Z81066-5|CAB02969.1| 777|Caenorhabditis elegans Hypothetical pr... 27 4.9
Z70680-8|CAA94570.2| 349|Caenorhabditis elegans Hypothetical pr... 27 6.5
AF125959-1|AAD14733.1| 475|Caenorhabditis elegans Hypothetical ... 27 8.6
>U00033-6|AAC48295.2| 104|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 36 protein.
Length = 104
Score = 102 bits (244), Expect = 1e-22
Identities = 48/82 (58%), Positives = 62/82 (75%)
Frame = +2
Query: 116 TDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRL 295
T ++ R R KG+ +K +K VR+LVRE+ G A YE+R +E+L++SKDKRALKFLKRR+
Sbjct: 20 TQLPVKQRQNRHKGVASKKTKIVRELVREITGFAPYERRVLEMLRISKDKRALKFLKRRI 79
Query: 296 GTHIRAKRKREELSNVLAQMRK 361
GTH RAK KREEL NV+ RK
Sbjct: 80 GTHRRAKGKREELQNVIIAQRK 101
>Z81589-9|CAJ85769.1| 926|Caenorhabditis elegans Hypothetical
protein T08G5.5b protein.
Length = 926
Score = 29.5 bits (63), Expect = 1.2
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = +2
Query: 137 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRAL 274
R LK L+ HS + ++ ++ HA YE+RA+ L ++ + ++AL
Sbjct: 679 RKRLLKFLEVSHSYSPQTVLLQLAPHAFYEERALILGRLKQHEQAL 724
>Z81589-8|CAB04720.1| 923|Caenorhabditis elegans Hypothetical
protein T08G5.5a protein.
Length = 923
Score = 29.5 bits (63), Expect = 1.2
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = +2
Query: 137 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRAL 274
R LK L+ HS + ++ ++ HA YE+RA+ L ++ + ++AL
Sbjct: 676 RKRLLKFLEVSHSYSPQTVLLQLAPHAFYEERALILGRLKQHEQAL 721
>AC006651-7|AAX22287.1| 786|Caenorhabditis elegans Hypothetical
protein H06I04.3c protein.
Length = 786
Score = 29.5 bits (63), Expect = 1.2
Identities = 20/66 (30%), Positives = 35/66 (53%)
Frame = +2
Query: 71 KATKQLKYPAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLK 250
KA KQ K + KA I L+ Q +HS+ VR++ + + EK+ +EL++
Sbjct: 710 KARKQKKMQRKLESAKKKAEGI----LENDQMEHSEKVREMKKVYANATRKEKKKVELVR 765
Query: 251 VSKDKR 268
++K K+
Sbjct: 766 MTKGKK 771
>AC006651-6|AAF39868.1| 833|Caenorhabditis elegans Hypothetical
protein H06I04.3a protein.
Length = 833
Score = 29.5 bits (63), Expect = 1.2
Identities = 20/66 (30%), Positives = 35/66 (53%)
Frame = +2
Query: 71 KATKQLKYPAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLK 250
KA KQ K + KA I L+ Q +HS+ VR++ + + EK+ +EL++
Sbjct: 710 KARKQKKMQRKLESAKKKAEGI----LENDQMEHSEKVREMKKVYANATRKEKKKVELVR 765
Query: 251 VSKDKR 268
++K K+
Sbjct: 766 MTKGKK 771
>AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical
protein Y47D3A.26 protein.
Length = 1205
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 134 IRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 268
++ ++ L T + L+REV G Y++R E LK+ K+ +
Sbjct: 140 VKQGKINELATSPDAYKLKLLREVAGTRVYDERKEESLKILKETK 184
>Z81066-5|CAB02969.1| 777|Caenorhabditis elegans Hypothetical
protein F17B5.1a protein.
Length = 777
Score = 27.5 bits (58), Expect = 4.9
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +2
Query: 143 ARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFL--KRRLGTHIRAK 316
AR+K + K K + + R+ + +A E LK+ ++++ K L +R+ + K
Sbjct: 535 ARIKEEEEKQRKILEEEARKKQEEEEARLKAEEELKIYEEEKRKKELEEERKKKEELEIK 594
Query: 317 RKREE 331
RK EE
Sbjct: 595 RKAEE 599
>Z70680-8|CAA94570.2| 349|Caenorhabditis elegans Hypothetical
protein C25G4.7 protein.
Length = 349
Score = 27.1 bits (57), Expect = 6.5
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +2
Query: 182 VRDLVREVVGHAQYEKRAMELLKV 253
+RD + EV+G+ Q++K +E+L V
Sbjct: 133 IRDFLCEVIGNRQFKKYKLEILTV 156
>AF125959-1|AAD14733.1| 475|Caenorhabditis elegans Hypothetical
protein H23N18.4 protein.
Length = 475
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +2
Query: 191 LVREVVGHAQYEKRAMELLKV 253
+V+++V + +YEK A ELL+V
Sbjct: 434 IVKDMVSNPKYEKNAQELLRV 454
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,435,367
Number of Sequences: 27780
Number of extensions: 150998
Number of successful extensions: 378
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -