Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_D14
         (365 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006714-13|ABB88218.1|  269|Caenorhabditis elegans F-box a prot...    27   4.1  
Z99277-7|CAI79256.1|  271|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z70212-4|CAA94164.1|  322|Caenorhabditis elegans Hypothetical pr...    26   9.5  

>AC006714-13|ABB88218.1|  269|Caenorhabditis elegans F-box a protein
           protein 76 protein.
          Length = 269

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 111 KTCSSCNYSSSTVNILIISSKFHIYQFY 28
           K  S  N+ + TVN+ ++ + FHI  FY
Sbjct: 166 KKVSRLNWYNQTVNVALLGNFFHIPWFY 193


>Z99277-7|CAI79256.1|  271|Caenorhabditis elegans Hypothetical
           protein Y53C12A.8 protein.
          Length = 271

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 15/51 (29%), Positives = 20/51 (39%)
 Frame = -3

Query: 216 DTRQSNGYKCVATSQSTNTEIQITMCLVLVLRN*CKTCSSCNYSSSTVNIL 64
           D  QS G+K V +S           C     R  C TCS  +   S + +L
Sbjct: 35  DANQSEGFKLVNSSTPRPIRHVDNQCFCYDNRQDCSTCSIDSTDESDIFVL 85


>Z70212-4|CAA94164.1|  322|Caenorhabditis elegans Hypothetical
           protein R04D3.6 protein.
          Length = 322

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +3

Query: 153 VFLC*LIVK-SPHICNH*IVLYHITCIFQVIL 245
           +FL  LIVK SP   +   ++  +TCIFQ++L
Sbjct: 26  LFLLFLIVKHSPKSIHMLRIILGLTCIFQIVL 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,093,135
Number of Sequences: 27780
Number of extensions: 127950
Number of successful extensions: 272
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)