Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_D12
(568 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 193 2e-50
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 192 2e-50
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 31 0.12
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 29 0.63
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 27 1.9
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|... 27 1.9
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 27 1.9
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro... 26 3.4
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch... 26 4.4
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 25 5.9
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 25 7.7
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 193 bits (470), Expect = 2e-50
Identities = 93/137 (67%), Positives = 105/137 (76%), Gaps = 1/137 (0%)
Frame = +2
Query: 104 FARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGV 283
F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGKTG VYNVT ++GV
Sbjct: 15 FQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGV 74
Query: 284 IVNKRVCGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVXLKRQPAP 463
++ K V R + KR+N+R+EHVKHSKCRQDFL RVK NE KEAKA GKTV L+RQPAP
Sbjct: 75 LIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAP 134
Query: 464 PKAAHIVS-GTEKPVLL 511
P AH VS +PV L
Sbjct: 135 PATAHFVSTENNEPVTL 151
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 192 bits (469), Expect = 2e-50
Identities = 93/137 (67%), Positives = 105/137 (76%), Gaps = 1/137 (0%)
Frame = +2
Query: 104 FARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGV 283
F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGKTG VYNVT ++GV
Sbjct: 15 FQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGV 74
Query: 284 IVNKRVCGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVXLKRQPAP 463
++ K V R + KR+N+R+EHVKHSKCRQDFL RVK NE KEAKA GKTV L+RQPAP
Sbjct: 75 LIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAP 134
Query: 464 PKAAHIVS-GTEKPVLL 511
P AH VS +PV L
Sbjct: 135 PAKAHFVSTENNEPVTL 151
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 31.1 bits (67), Expect = 0.12
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +3
Query: 360 SADKTSLRESKRMRGY*RKPRLPARPSX*RDSQLPLKLPTSSVELRNPSYL-PPIPIRIR 536
S+ T + + M KPRLP RPS S+L TS PS L PP P R++
Sbjct: 340 SSPYTHIAPASEMSLIPEKPRLPPRPSH-TLSELSSPALTSENLSSKPSPLFPPPPPRVK 398
Query: 537 SVKSN 551
S+ +N
Sbjct: 399 SLATN 403
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 28.7 bits (61), Expect = 0.63
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = +2
Query: 296 RVCGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVXLKRQ 454
R+C + P I + K DF KR E +R+ +E A KTV L Q
Sbjct: 160 RLCSLVHPNDPAILALSKELQKKSDDFEKRESEKKRVAQEKVIAAKTVLLALQ 212
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1317
Score = 27.1 bits (57), Expect = 1.9
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = -1
Query: 433 LAGSLGFLQ*PLILFDSLKEVLSALGVLDMLNTDIDALRYNPSADTLVDNHTESV 269
+A SLG Q +L +LSA G M D+ + PS+ TL D++TES+
Sbjct: 509 IAKSLGITQ---VLVHKYSSILSAYG---MALADVVSEVQEPSSFTLDDSNTESI 557
>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 27.1 bits (57), Expect = 1.9
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Frame = -1
Query: 502 GFLSSTDDVGSFRGSWLSLQXDGLAGSL-GFLQ*PL----ILFDSLKEVLSALGVLDMLN 338
GF S+T SF+G W+ L + G L G LQ + +++SL EV ++ + L+
Sbjct: 445 GFASATILPMSFQGGWIDLPIAFILGCLVGILQHYIAPRSTMYNSLFEVTGSI-ITSFLS 503
Query: 337 TDIDALRYN 311
++RY+
Sbjct: 504 RAFGSIRYS 512
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 27.1 bits (57), Expect = 1.9
Identities = 12/44 (27%), Positives = 17/44 (38%)
Frame = +1
Query: 133 YSALHVHESVQSWRHCRHQRQWCSSKGYATQSIPWKDRSRVQRY 264
+ L H SW + R+ C +KGY PW + Y
Sbjct: 199 FKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPWHRKCAFDAY 242
>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
6-
hydroxymethyldihydropteridinediphosphokinase/dihydroneop
terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 26.2 bits (55), Expect = 3.4
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = -1
Query: 262 NVVHATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERNSS 128
N + + C V H + T+ V N +H++ ERNS+
Sbjct: 81 NKIASLCFEDVIDTSHVSIKLTLPKCVLRSKNGLHYYAERERNST 125
>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 25.8 bits (54), Expect = 4.4
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +2
Query: 260 VTAHALGVIVNKRVCGRIIPKRINIRVEHVKHSKCRQDFLKRVKEN 397
V +LGV++ VCGR+ +++ + H K + +F + E+
Sbjct: 232 VDVWSLGVVIYVMVCGRVPFDDVSVPMLHSKIKSGKLEFPSYISED 277
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 25.4 bits (53), Expect = 5.9
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +2
Query: 380 KRVKENERLLK-EAKAAGKTVXLKRQPAPPKAAHIVSGTEKPVL 508
K+ KE + LK E+ T + QP P SGTE V+
Sbjct: 269 KKKKEQKWTLKFESDKGTSTQCITHQPLPGSTPSFASGTENGVI 312
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 25.0 bits (52), Expect = 7.7
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +3
Query: 321 SASISVLSMSSTPSADKTSLRESKRMRGY*RKPRLPARPSX*RDSQLPLKLPTSSVELRN 500
SAS S S++S+ S D ++ +R R RKP + +P+ + + P + T +
Sbjct: 56 SASRSPESIASSQSNDSAAIPSYRRKRRKVRKPEI-VKPTLRKRGRKPKNISTLEHDKSK 114
Query: 501 P 503
P
Sbjct: 115 P 115
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,174,447
Number of Sequences: 5004
Number of extensions: 41949
Number of successful extensions: 171
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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