Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_D12
(568 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L15188-7|AAA27951.1| 161|Caenorhabditis elegans Ribosomal prote... 173 1e-43
Z83244-6|CAD18877.1| 502|Caenorhabditis elegans Hypothetical pr... 33 0.11
Z83244-5|CAB54315.1| 568|Caenorhabditis elegans Hypothetical pr... 33 0.11
Z83244-4|CAB54314.1| 562|Caenorhabditis elegans Hypothetical pr... 33 0.11
Z92775-2|CAB07162.2| 382|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z92775-1|CAB07161.2| 379|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z78016-1|CAB01439.1| 276|Caenorhabditis elegans Hypothetical pr... 29 3.1
AL132853-5|CAB60443.1| 279|Caenorhabditis elegans Hypothetical ... 29 3.1
Z46267-9|CAA86427.2| 889|Caenorhabditis elegans Hypothetical pr... 28 5.4
AF026206-4|AAK39309.1| 535|Caenorhabditis elegans Hypothetical ... 27 7.1
AF026206-3|AAK39308.1| 518|Caenorhabditis elegans Hypothetical ... 27 7.1
AF026206-2|AAT92054.1| 552|Caenorhabditis elegans Hypothetical ... 27 7.1
U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical pr... 27 9.4
AC026301-1|AAK68897.1| 280|Caenorhabditis elegans Hypothetical ... 27 9.4
>L15188-7|AAA27951.1| 161|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 21 protein.
Length = 161
Score = 173 bits (420), Expect = 1e-43
Identities = 84/140 (60%), Positives = 102/140 (72%), Gaps = 2/140 (1%)
Frame = +2
Query: 101 LFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALG 280
+FAR FR HG LSTY YK GD+VDI+ NGA QKGMP K YHG+TGR++NVT A+G
Sbjct: 14 MFARDFRKHGVEHLSTYYTQYKRGDLVDIKTNGAFQKGMPFKAYHGRTGRIFNVTRGAVG 73
Query: 281 VIVNKRVCGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTV-XLKRQP 457
+IVNKRV G I+PKRINIR+EH+K SKCR DFL RVK N+ K AK+AG+ V LKR P
Sbjct: 74 IIVNKRVRGNILPKRINIRIEHIKPSKCRTDFLNRVKSNDEKRKAAKSAGQPVPALKRLP 133
Query: 458 APPKAAH-IVSGTEKPVLLA 514
P+ AH + + +P LLA
Sbjct: 134 VAPRGAHTVTTQNNEPELLA 153
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +1
Query: 61 MTNSKGYRRGTRXL 102
MTNSKG RRGTR +
Sbjct: 1 MTNSKGLRRGTRYM 14
>Z83244-6|CAD18877.1| 502|Caenorhabditis elegans Hypothetical
protein W06F12.2c protein.
Length = 502
Score = 33.5 bits (73), Expect = 0.11
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -2
Query: 246 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 109
PVFP Y+ G+P PLP +P M V+ + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271
>Z83244-5|CAB54315.1| 568|Caenorhabditis elegans Hypothetical
protein W06F12.2b protein.
Length = 568
Score = 33.5 bits (73), Expect = 0.11
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -2
Query: 246 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 109
PVFP Y+ G+P PLP +P M V+ + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271
>Z83244-4|CAB54314.1| 562|Caenorhabditis elegans Hypothetical
protein W06F12.2a protein.
Length = 562
Score = 33.5 bits (73), Expect = 0.11
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -2
Query: 246 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 109
PVFP Y+ G+P PLP +P M V+ + P V+NLR
Sbjct: 220 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 265
>Z92775-2|CAB07162.2| 382|Caenorhabditis elegans Hypothetical
protein C06H5.2 protein.
Length = 382
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = -1
Query: 400 LILFDSLKEVLSALGVLDMLNTDIDALRYNPSADTLVDNHTE 275
LILFD+LK VL ++GVL + I+ L A+ L +TE
Sbjct: 200 LILFDALKNVLQSVGVLTTKSVLINWLPSVQIAEILEHFNTE 241
>Z92775-1|CAB07161.2| 379|Caenorhabditis elegans Hypothetical
protein C06H5.1 protein.
Length = 379
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = -1
Query: 400 LILFDSLKEVLSALGVLDMLNTDIDALRYNPSADTLVDNHTE 275
LILFD+LK VL ++GVL + I+ L A+ L +TE
Sbjct: 200 LILFDALKNVLQSVGVLTTKSVLINWLPSVQIAEILEHFNTE 241
>Z78016-1|CAB01439.1| 276|Caenorhabditis elegans Hypothetical
protein R186.1 protein.
Length = 276
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 505 DGFLSSTDDVGSFRGSWLSLQXDGLAGSL 419
DG LS D + RG+WL L +G G +
Sbjct: 39 DGILSGVDKQENARGTWLGLNENGRIGMM 67
>AL132853-5|CAB60443.1| 279|Caenorhabditis elegans Hypothetical
protein Y80D3A.9 protein.
Length = 279
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 505 DGFLSSTDDVGSFRGSWLSLQXDGLAGSL 419
DG LS D+ RG+WL + G G L
Sbjct: 39 DGMLSGVDEKDVARGTWLGMDAHGKVGML 67
>Z46267-9|CAA86427.2| 889|Caenorhabditis elegans Hypothetical
protein F49E2.5d protein.
Length = 889
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 338 VEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVX-LKRQPAPPKAAHIVSGTEKPV 505
VE+V + K+N++ K++++ T ++ PAPP+ +V EKPV
Sbjct: 361 VENVVEKSTTPPATENKKKNKKDKKKSESEKVTEQPVESAPAPPQVEQVVEKVEKPV 417
>AF026206-4|AAK39309.1| 535|Caenorhabditis elegans Hypothetical
protein T28B4.1a protein.
Length = 535
Score = 27.5 bits (58), Expect = 7.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 295 LVDNHTESVSSNVVHATCLSMVY 227
+ D H +++SSN H CL + Y
Sbjct: 246 ITDEHVDAISSNCAHLECLCVNY 268
>AF026206-3|AAK39308.1| 518|Caenorhabditis elegans Hypothetical
protein T28B4.1b protein.
Length = 518
Score = 27.5 bits (58), Expect = 7.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 295 LVDNHTESVSSNVVHATCLSMVY 227
+ D H +++SSN H CL + Y
Sbjct: 229 ITDEHVDAISSNCAHLECLCVNY 251
>AF026206-2|AAT92054.1| 552|Caenorhabditis elegans Hypothetical
protein T28B4.1c protein.
Length = 552
Score = 27.5 bits (58), Expect = 7.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 295 LVDNHTESVSSNVVHATCLSMVY 227
+ D H +++SSN H CL + Y
Sbjct: 263 ITDEHVDAISSNCAHLECLCVNY 285
>U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical
protein ZK418.6 protein.
Length = 825
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 443 LKRQPAPPKAAHIVSGTE 496
L+R+PAPPK H+ S E
Sbjct: 463 LRRRPAPPKQNHVASPAE 480
>AC026301-1|AAK68897.1| 280|Caenorhabditis elegans Hypothetical
protein Y54F10BM.6 protein.
Length = 280
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +1
Query: 193 QWCSSKGYATQSIPWKDRSRVQRYCSRSRCDCQQACLRKDYTEAHQYPC*ACQ 351
Q C K Y++Q + RV C + C+ AC+ D+T+ + C C+
Sbjct: 147 QTCRKK-YSSQDV--SRTPRVYSTCGHTSCE---ACVESDFTQKKRVVCLTCE 193
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,238,021
Number of Sequences: 27780
Number of extensions: 244115
Number of successful extensions: 888
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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