Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_D09
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23G3.11 |rpn6||19S proteasome regulatory subunit Rpn6|Schizo... 56 4e-09
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 28 1.4
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 27 1.8
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo... 27 2.4
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 26 5.5
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 26 5.5
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 5.5
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 26 5.5
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 5.5
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac... 26 5.5
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 26 5.5
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc... 26 5.5
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 26 5.5
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 26 5.5
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 26 5.5
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 5.5
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 26 5.5
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 26 5.5
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 25 7.2
SPAC1399.04c |||uracil phosphoribosyltransferase |Schizosaccharo... 25 7.2
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo... 25 9.5
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 25 9.5
SPBC19G7.13 |trf1||telomeric DNA binding factor Trf1|Schizosacch... 25 9.5
>SPAC23G3.11 |rpn6||19S proteasome regulatory subunit
Rpn6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 56.0 bits (129), Expect = 4e-09
Identities = 22/52 (42%), Positives = 37/52 (71%)
Frame = +2
Query: 383 LXDFFLDLEAGIGIEVQLCKECIEWAKEERRTFLRQSLEARLIALYFDTGMY 538
L D F + + +++++ +CI+WA +E+RTFLRQ+LE +LI+LY+D Y
Sbjct: 90 LIDKFSGEKKSLPLQIEVANDCIKWAIKEKRTFLRQALETKLISLYYDNSSY 141
Score = 29.5 bits (63), Expect = 0.44
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +1
Query: 223 DEENIRAKEQGILNXXXXXXXXXXXXXXXXXXXXTRPFLSLISKAKAAKLVRSLX*LLPR 402
DE+ +EQ + N +RP ++ SKAK+AK+VR+ L+ +
Sbjct: 37 DEKVANEQEQALTNLSDLYVRENRHNDLAQLVQQSRPLMANFSKAKSAKIVRT---LIDK 93
Query: 403 FGGRDR 420
F G +
Sbjct: 94 FSGEKK 99
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -1
Query: 441 LHNCTSIPIPASKSRKKSX-KGTYQFRSFSFTYEAQKWS 328
L +CTS + R +S KG+Y F FS T +KW+
Sbjct: 59 LRSCTSCIQAYYELRNESLAKGSYSFTGFSITDLQEKWN 97
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 239 LMFXXXXXXXSPVLTILSVMRTSSSLFVDDETRDL 135
L+F P LTI +++ T S DDE R++
Sbjct: 1038 LVFGSIFGYLEPALTITAILSTKSPFLGDDEAREI 1072
>SPBC336.14c |ppk26||serine/threonine protein kinase
Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 589
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 206 PVLTILSVMRTSSSLFVDDETRD 138
P+ T+L RT + LF+DD TR+
Sbjct: 172 PMPTLLPYERTVNGLFIDDTTRE 194
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.5
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = -3
Query: 622 KKHFNQ*VFVIKFF*LFQKCSSKVQSFRIHTSVEIQSNKSCFQRLPKKGASFFLGPFYAL 443
K+H N +K + F +++ F+ V ++ K+ F K A F GPFY L
Sbjct: 1168 KEHLNTNNIKMKKY--FDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVL 1225
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.5
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = -3
Query: 622 KKHFNQ*VFVIKFF*LFQKCSSKVQSFRIHTSVEIQSNKSCFQRLPKKGASFFLGPFYAL 443
K+H N +K + F +++ F+ V ++ K+ F K A F GPFY L
Sbjct: 1168 KEHLNTNNIKMKKY--FDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVL 1225
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.5
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = -3
Query: 622 KKHFNQ*VFVIKFF*LFQKCSSKVQSFRIHTSVEIQSNKSCFQRLPKKGASFFLGPFYAL 443
K+H N +K + F +++ F+ V ++ K+ F K A F GPFY L
Sbjct: 1168 KEHLNTNNIKMKKY--FDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVL 1225
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.5
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = -3
Query: 622 KKHFNQ*VFVIKFF*LFQKCSSKVQSFRIHTSVEIQSNKSCFQRLPKKGASFFLGPFYAL 443
K+H N +K + F +++ F+ V ++ K+ F K A F GPFY L
Sbjct: 1168 KEHLNTNNIKMKKY--FDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVL 1225
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.5
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = -3
Query: 622 KKHFNQ*VFVIKFF*LFQKCSSKVQSFRIHTSVEIQSNKSCFQRLPKKGASFFLGPFYAL 443
K+H N +K + F +++ F+ V ++ K+ F K A F GPFY L
Sbjct: 1168 KEHLNTNNIKMKKY--FDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVL 1225
>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 5.5
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Frame = +1
Query: 97 INIHSMAGAMLFERSRVSSSTNRDEDVRM-TDKMVSTGE----LPEDDEENIRAKEQGIL 261
+N+ S+ + V SS +D+ + T + TG LPED E+I + QGI+
Sbjct: 290 VNLESITVTNSTSSNNVQSSKRSSKDIEVNTTVTLDTGTVYIYLPEDTVESIADQYQGIV 349
Query: 262 N 264
+
Sbjct: 350 S 350
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.5
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = -3
Query: 622 KKHFNQ*VFVIKFF*LFQKCSSKVQSFRIHTSVEIQSNKSCFQRLPKKGASFFLGPFYAL 443
K+H N +K + F +++ F+ V ++ K+ F K A F GPFY L
Sbjct: 1168 KEHLNTNNIKMKKY--FDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVL 1225
>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 56 TILLFIEYFYSVSV*IYTVWPER 124
+I L+I+Y YS +V YT W ++
Sbjct: 310 SIRLWIDYLYSTAVDFYTNWIQK 332
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.5
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = -3
Query: 622 KKHFNQ*VFVIKFF*LFQKCSSKVQSFRIHTSVEIQSNKSCFQRLPKKGASFFLGPFYAL 443
K+H N +K + F +++ F+ V ++ K+ F K A F GPFY L
Sbjct: 1168 KEHLNTNNIKMKKY--FDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVL 1225
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.5
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = -3
Query: 622 KKHFNQ*VFVIKFF*LFQKCSSKVQSFRIHTSVEIQSNKSCFQRLPKKGASFFLGPFYAL 443
K+H N +K + F +++ F+ V ++ K+ F K A F GPFY L
Sbjct: 1168 KEHLNTNNIKMKKY--FDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVL 1225
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = +1
Query: 97 INIHSMAGAMLFERSRVSSSTNRDEDVRMTDKMVSTGELPEDDEENIR 240
+N + M+G FE ++ S +TN ++ +T ++ ++D +N R
Sbjct: 619 LNSNGMSGTEGFENTQTSITTNDNQSSILTSSDQTSPFATDEDRQNSR 666
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.5
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = -3
Query: 622 KKHFNQ*VFVIKFF*LFQKCSSKVQSFRIHTSVEIQSNKSCFQRLPKKGASFFLGPFYAL 443
K+H N +K + F +++ F+ V ++ K+ F K A F GPFY L
Sbjct: 1168 KEHLNTNNIKMKKY--FDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVL 1225
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.5
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = -3
Query: 622 KKHFNQ*VFVIKFF*LFQKCSSKVQSFRIHTSVEIQSNKSCFQRLPKKGASFFLGPFYAL 443
K+H N +K + F +++ F+ V ++ K+ F K A F GPFY L
Sbjct: 1168 KEHLNTNNIKMKKY--FDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVL 1225
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 5.5
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = -3
Query: 622 KKHFNQ*VFVIKFF*LFQKCSSKVQSFRIHTSVEIQSNKSCFQRLPKKGASFFLGPFYAL 443
K+H N +K + F +++ F+ V ++ K+ F K A F GPFY L
Sbjct: 1168 KEHLNTNNIKMKKY--FDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVL 1225
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 154 STNRDEDVRMTDKMVSTGELPEDDEENIRAKEQGILN 264
S + D + R D G+L +EE+I+ E +LN
Sbjct: 404 SPHNDAETRADDDAYLMGDLFNQEEEDIQDTENDLLN 440
>SPAC1399.04c |||uracil phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 220
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -2
Query: 500 LPKTAEERCVVLPWPILCTLYTTVLLYRSL 411
LPK A++R V+L P+L T + +L ++L
Sbjct: 127 LPKDAQDRLVLLLDPLLATGNSVILAIQTL 156
>SPAC20G8.10c ||SPAC3A12.01c|beclin family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 464
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +2
Query: 362 LRNWYVPLXDFFLDL-EAGIGIEVQLCKECIEWAKEERRTFLRQSLEARLIALYFD 526
L +W + + + DL + ++ LC EC E EE LR E + + +D
Sbjct: 117 LFSWKIEIYNRIFDLLSSKTKVDHPLCVECAELLTEEMSKTLRALKEEKKMYFNYD 172
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 139 SRVSSSTNRDEDVRMTDKMVSTGELPEDDEEN 234
S+V +S N+DE+ + D + S +++EEN
Sbjct: 74 SQVQNSPNKDEEHQTADLLASNEGNEKNNEEN 105
>SPBC19G7.13 |trf1||telomeric DNA binding factor
Trf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = -1
Query: 468 SSLAHSMHSLHNCTS-IPIPASKSRKKSXKGTYQFRS 361
S +A +H+ ++ S IPIPA+ +++S K +F++
Sbjct: 305 SEIACYIHNNYSSISAIPIPANSFKRRSKKNGLRFKA 341
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,608,584
Number of Sequences: 5004
Number of extensions: 53151
Number of successful extensions: 158
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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