Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_D09
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0012 + 22145111-22146388                                         50   1e-06
03_05_0106 + 20880069-20881001                                         39   0.004
07_03_1765 - 29329350-29331290,29331705-29331827,29332205-29333026     29   2.4  
04_01_0611 - 8029101-8029205,8029985-8030107,8030191-8030556,803...    29   4.3  
05_06_0071 + 25355853-25356095,25356183-25356239,25356848-253570...    28   7.5  
12_01_0777 - 7095081-7096259,7096636-7096725,7096827-7096902,709...    27   9.9  
08_01_0091 + 664913-664985,665281-665576,667197-667311,667901-66...    27   9.9  

>04_04_0012 + 22145111-22146388
          Length = 425

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 20/39 (51%), Positives = 28/39 (71%)
 Frame = +2

Query: 422 IEVQLCKECIEWAKEERRTFLRQSLEARLIALYFDTGMY 538
           +++ LCKE +EW + E+RTFLRQ +EARL AL  +   Y
Sbjct: 108 LQISLCKEMVEWTRAEKRTFLRQRVEARLAALLLENQEY 146



 Score = 35.1 bits (77), Expect = 0.049
 Identities = 20/57 (35%), Positives = 23/57 (40%)
 Frame = +1

Query: 214 PEDDEENIRAKEQGILNXXXXXXXXXXXXXXXXXXXXTRPFLSLISKAKAAKLVRSL 384
           P    E +R KE  I N                     RPF SLI KAK AK+VR +
Sbjct: 39  PSSSAEALRTKELAITNLTNYLTKENRAEELRNLLTQLRPFFSLIPKAKTAKIVRGI 95


>03_05_0106 + 20880069-20881001
          Length = 310

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = +2

Query: 449 IEWAKEERRTFLRQSLEARLIALYFDTGMY 538
           +EW + E+RTFLRQ +EARL AL  +   Y
Sbjct: 2   VEWTRAEKRTFLRQRVEARLAALLLENQEY 31


>07_03_1765 - 29329350-29331290,29331705-29331827,29332205-29333026
          Length = 961

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 500  LPKTAEERCVVLPWPILCTLYTTVLLYRSL 411
            +P +A  RC+VL W  L    +++LL  SL
Sbjct: 931  IPSSAHRRCLVLLWTTLLVFMSSILLVLSL 960


>04_01_0611 -
           8029101-8029205,8029985-8030107,8030191-8030556,
           8030639-8031124
          Length = 359

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -1

Query: 504 LASKDCRRKVRRSSLAHSMHSLHNCTSIPIPASKSRKKSXK 382
           +A +D ++K+R+    HS HS     + P+   K +KK  K
Sbjct: 216 VAEEDRKKKLRKEFNFHSFHSKGKDDTTPVKNLKDKKKEVK 256


>05_06_0071 +
           25355853-25356095,25356183-25356239,25356848-25357069,
           25357143-25357227,25357993-25358083,25358172-25358336,
           25358583-25358699,25358773-25358848,25359940-25360102,
           25360184-25361064
          Length = 699

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = -3

Query: 577 LFQKCSSKVQSFRIHTSVEIQ-SNKSCFQRL--PKKGASFFLGPFYALFTQL 431
           LF+  +S     RI +SV     NKS F     P+ GAS F+ P++ L   L
Sbjct: 254 LFEPVNSSDSKLRILSSVASSLENKSVFHICFNPRSGASEFIVPYWRLLKSL 305


>12_01_0777 -
           7095081-7096259,7096636-7096725,7096827-7096902,
           7097150-7097367,7097502-7097717,7097922-7098107,
           7098181-7098303,7098399-7098514,7099254-7099832,
           7101485-7101517,7102485-7103679,7103732-7103797,
           7104843-7104905,7105328-7105411
          Length = 1407

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 139 SRVSSSTNRDEDVRMTDKMVSTGELPEDDEENIRAKEQGI 258
           S  + S  R ED+   D  VS+ +L E+D + ++ KEQ +
Sbjct: 221 SFTAHSDTRSEDLDGVDIWVSSLDLDEEDSDLLQEKEQDL 260


>08_01_0091 +
           664913-664985,665281-665576,667197-667311,667901-667971
          Length = 184

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 133 ERSRVSSSTNRDEDVRMTDKMVSTGELPEDDEENIRAKEQG 255
           ERSR  +   R     ++     TGE  EDD+E  R   +G
Sbjct: 34  ERSRSEARMGRKRKELLSSAPWRTGEAAEDDDEAARLSREG 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,687,619
Number of Sequences: 37544
Number of extensions: 349322
Number of successful extensions: 853
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)