Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_D09
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13876-16|AAW88394.1|  420|Caenorhabditis elegans Proteasome reg...    54   7e-08
U13876-15|AAA21173.2|  438|Caenorhabditis elegans Proteasome reg...    54   7e-08
Z11505-3|CAA77584.2|  468|Caenorhabditis elegans Hypothetical pr...    42   3e-04
Z82280-7|CAB05268.3|  304|Caenorhabditis elegans Hypothetical pr...    31   0.94 
Z73972-6|CAI46600.1|  262|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z78065-5|CAB01515.1|  954|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z83122-1|CAB05597.1|  293|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AF026215-8|AAB71317.1|  415|Caenorhabditis elegans Hypothetical ...    28   6.7  

>U13876-16|AAW88394.1|  420|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 6, isoform b
           protein.
          Length = 420

 Score = 54.4 bits (125), Expect = 7e-08
 Identities = 33/78 (42%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
 Frame = +2

Query: 308 QNLSKPPDHF*AS*VKLKLRNWYVPLXDFFLDLEAGIG-IEVQLCKECIEWAKEERRTFL 484
           +N+ +    F  S  K K       L D  L ++   G I+V L KECI+WA E+ RTFL
Sbjct: 63  RNMIEQTRPFLVSLGKAKAAKLVRDLVDLCLKIDDQDGDIKVGLVKECIQWATEQNRTFL 122

Query: 485 RQSLEARLIALYFDTGMY 538
           RQ+L ARL+ LY D   Y
Sbjct: 123 RQTLTARLVRLYNDLQRY 140


>U13876-15|AAA21173.2|  438|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 6, isoform a
           protein.
          Length = 438

 Score = 54.4 bits (125), Expect = 7e-08
 Identities = 33/78 (42%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
 Frame = +2

Query: 308 QNLSKPPDHF*AS*VKLKLRNWYVPLXDFFLDLEAGIG-IEVQLCKECIEWAKEERRTFL 484
           +N+ +    F  S  K K       L D  L ++   G I+V L KECI+WA E+ RTFL
Sbjct: 81  RNMIEQTRPFLVSLGKAKAAKLVRDLVDLCLKIDDQDGDIKVGLVKECIQWATEQNRTFL 140

Query: 485 RQSLEARLIALYFDTGMY 538
           RQ+L ARL+ LY D   Y
Sbjct: 141 RQTLTARLVRLYNDLQRY 158


>Z11505-3|CAA77584.2|  468|Caenorhabditis elegans Hypothetical
           protein F59B2.5 protein.
          Length = 468

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 20/41 (48%), Positives = 26/41 (63%)
 Frame = +2

Query: 404 LEAGIGIEVQLCKECIEWAKEERRTFLRQSLEARLIALYFD 526
           L+ G   ++ L   CI WA   +R FLR+SL+ARLI LY D
Sbjct: 143 LDHGKKEKIDLLTNCIGWATSNKREFLRRSLQARLIRLYND 183


>Z82280-7|CAB05268.3|  304|Caenorhabditis elegans Hypothetical
           protein R05A10.7 protein.
          Length = 304

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 33/105 (31%), Positives = 44/105 (41%), Gaps = 5/105 (4%)
 Frame = -1

Query: 363 SFSFTY-EAQKWSGGFDKF-CQLLSLPFLFVFLAEVKDTLLLCSYVFF---IIFGQLASA 199
           S+ F Y + Q  S    KF C LL        L E K+   L + +     +IF    S 
Sbjct: 10  SYDFCYTDPQNTSIIGKKFDCSLLDTLENLNLLGETKEVFSLSNLIQNENDLIFASATSD 69

Query: 198 DHFVSHADVFVSVRR**DA*SFK*HRSGHTVYIYTLTL*KYSINS 64
           DHF    D F S+R+         +   HT  +Y L L +Y INS
Sbjct: 70  DHFNFSMDSFHSIRK---------YYPNHTYILYGLGLSEYYINS 105


>Z73972-6|CAI46600.1|  262|Caenorhabditis elegans Hypothetical
           protein F15H10.10 protein.
          Length = 262

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = -3

Query: 187 QSCGRLRLCSSMMRRVIFQITSLRPYCVYLYAYTIKVFDK*QDCITTGTLFF 32
           + CG +    S  RR   Q++    YC++ YA   K+ +  + C    T  +
Sbjct: 39  EECGHIYKSCSKRRRRNSQVSRTSKYCLFFYADRDKILNTEKQCFDVQTAIY 90


>Z78065-5|CAB01515.1|  954|Caenorhabditis elegans Hypothetical
           protein T09E8.2 protein.
          Length = 954

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = +2

Query: 116 PERCYLKDHASHHRRTETKTSA*LTKWSALASCPKMMKKT*EQRSRV 256
           P R YL   ASH  R   +  A L  W   A+CP +   T E+R  V
Sbjct: 766 PGRHYLC--ASHFNRNSLRYHAGLGLWRRAAACPVLACTTDEERQEV 810


>Z83122-1|CAB05597.1|  293|Caenorhabditis elegans Hypothetical
           protein R11A5.2 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 169 EDVRMTDKMVSTGELPEDDEENIRAKEQGI 258
           EDVRM + +    E+  DD +NI+ K Q +
Sbjct: 214 EDVRMEETIAKIDEVRIDDNKNIQEKSQRV 243


>AF026215-8|AAB71317.1|  415|Caenorhabditis elegans Hypothetical
           protein F09G2.9 protein.
          Length = 415

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 133 ERSRVSSSTNRDEDVRMTDKMVSTGELPEDDEENIRAKEQ 252
           E +  SS   +DE V  T++     E P  DEE+  A+E+
Sbjct: 171 EEAPASSEEKKDEPVVNTEEKKDAAEAPAADEESEAAEEK 210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,560,055
Number of Sequences: 27780
Number of extensions: 308715
Number of successful extensions: 875
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)