Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_D06
         (472 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   1.9  
SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyce...    27   1.9  
SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc...    25   5.8  

>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 172 FLGVYLIISKLFWTFWSLYGH 234
           F+G +L+   +FW  W+ Y H
Sbjct: 420 FIGCFLLPISMFWFAWTCYPH 440


>SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 456

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = -1

Query: 103 YNCISRSVCLDFVHFNVDCWCNFN---VRAWYDK 11
           +NC   S   DF  FN+  WC ++   V  +YD+
Sbjct: 209 FNCGDESERADFYAFNMYEWCGYSSMTVSGYYDR 242


>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +1

Query: 175 LGVYLIISKLFWTFWSLYGHSTSDSSTLKHNTSGGAD*ILALPRKSQNSQQISF 336
           L   L+ S+ FWTF+SL   S+ D ++   +T       + L  KSQ ++ IS+
Sbjct: 152 LNEVLLNSRDFWTFFSLIQASSFDMASDAFSTFKS----ILLNHKSQVAEFISY 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,737,190
Number of Sequences: 5004
Number of extensions: 31668
Number of successful extensions: 107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)