Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_D01
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    34   0.011
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch...    29   0.52 
SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|...    26   3.7  
SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1 |Schizos...    25   6.5  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    25   8.5  
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch...    25   8.5  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    25   8.5  

>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 34.3 bits (75), Expect = 0.011
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = +2

Query: 242 NKNAHNSMFGLMLHSHITNKRKSMTSSRSWKHHVQMPTLTIGISKEIR 385
           +++A NS+  L LHS++  K KS  SS+ W  H   P +T  + + +R
Sbjct: 718 SRDARNSLTSLSLHSNVA-KNKSSHSSK-WPTHTLSPIITTALKQPVR 763


>SPAC31G5.10 |eta2||Myb family transcriptional regulator
           Eta2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 28.7 bits (61), Expect = 0.52
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +2

Query: 305 KSMTSSRSWKHHVQMPTLTIGISKEIRCGLSTCWPHTMCKKLTKRSPKIRKKNY 466
           K MTS  +  +H      T  I +EI    S  W H++ KKL  +SP+  +K Y
Sbjct: 408 KKMTSLFTHNNHT-----TSNIQREIPASDSIAW-HSISKKLGTKSPESCRKQY 455


>SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 539

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 80  TYIYRVFCVCTNILKNFFFFWSLWPG 3
           TYI  +  V  NI  N+ F WS W G
Sbjct: 250 TYILAIV-VPINIFLNYLFVWSPWVG 274


>SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 8/33 (24%), Positives = 22/33 (66%)
 Frame = -1

Query: 99  LTKIYQNVYLSRFLCMYKHIKKFFFFLEFVAWS 1
           L+K+++  +++RF+ +Y ++   FF L  + ++
Sbjct: 221 LSKLFEMPWVTRFVFLYMYLATAFFLLRSLKYA 253


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = -1

Query: 324 LEEVIDFLLFVICE--CNINPNIEL*AF 247
           +++ I  L  ++CE  C++NPN+E  AF
Sbjct: 507 VQKAIPMLPPLLCERLCSLNPNVERLAF 534


>SPBC1773.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 20/90 (22%), Positives = 35/90 (38%)
 Frame = +1

Query: 112 LYNEVIKNKKIKMSLEIPLMSTDEVIDLDPEQLPSGDEVLSILQQERSQLNVWINVALAY 291
           L++   KN  ++  L  P M+   V+      LP    V+S +       N   N    +
Sbjct: 25  LFSNGCKNVHLEAQLH-PRMNATFVMLARNSDLPG---VVSSINSLEKHFNRHFNYPYTF 80

Query: 292 YKQKKIDDFLKILEASRTDANIDYRDFERD 381
              +  D+  K      T AN+++   E+D
Sbjct: 81  LNDEPFDEKFKETILKLTSANVEFGTLEKD 110


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 135 IFNYFIIQNSNLLTKIYQNVYLSRFLCMYKHIKKFFFFLEFVAW 4
           I +Y I  N++    IY+ +  S + C++ H KK   +   V W
Sbjct: 117 IRSYIIPTNADPQNIIYE-ISQSGYYCIWSHSKKMLPYQALVNW 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,043,617
Number of Sequences: 5004
Number of extensions: 40596
Number of successful extensions: 119
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)