Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_D01
(504 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0358 - 17177253-17177369,17177635-17177931,17178961-171790... 58 3e-09
03_05_0598 + 26006027-26006746,26007992-26008094,26008847-26012394 28 3.7
05_03_0633 + 16416913-16417009,16417976-16418060,16418398-164185... 28 4.9
01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33... 27 6.5
06_03_1313 - 29252335-29252446,29253430-29253671,29253770-292538... 27 8.6
>07_03_0358 -
17177253-17177369,17177635-17177931,17178961-17179032,
17179117-17179383,17179752-17179910,17180194-17180295,
17180696-17180767,17181105-17181200,17181710-17181871,
17181941-17182021,17182837-17183094,17183173-17183275,
17183412-17183542,17184827-17184919,17184999-17185099,
17186271-17186355,17186487-17186701,17186779-17186842,
17187128-17187214,17188922-17189022,17190206-17190397,
17190533-17190599,17191211-17191351
Length = 1020
Score = 58.4 bits (135), Expect = 3e-09
Identities = 30/91 (32%), Positives = 58/91 (63%), Gaps = 2/91 (2%)
Frame = +1
Query: 151 SLEIPLMSTDEVIDLDPEQLPS-GDEVLSILQQERSQLNVWINVALAYYKQKKIDDFLKI 327
S+ IP+ T+E + + +QLP+ ++L IL+ E++ L++W+ +A Y+KQ KI+ F +I
Sbjct: 3 SVYIPVQGTEEEVRVALDQLPADASDILDILKAEQAPLHLWLIIAREYFKQGKIEQFRQI 62
Query: 328 L-EASRTDANIDYRDFERDQMRALDMLAAYY 417
L E S + + Y D + +++ L+ L A++
Sbjct: 63 LEEGSGPEIDEYYADVKYERIAILNALGAFH 93
>03_05_0598 + 26006027-26006746,26007992-26008094,26008847-26012394
Length = 1456
Score = 28.3 bits (60), Expect = 3.7
Identities = 24/101 (23%), Positives = 46/101 (45%)
Frame = +1
Query: 121 EVIKNKKIKMSLEIPLMSTDEVIDLDPEQLPSGDEVLSILQQERSQLNVWINVALAYYKQ 300
E I+ +K+ + +S D+ ++ L S L+ + Q + W + A
Sbjct: 1246 EAIREMWLKLLQALKKLSLDQREEVRNHALTSLQRCLTATEGVCLQSSTWSH-AFDLVIF 1304
Query: 301 KKIDDFLKILEASRTDANIDYRDFERDQMRALDMLAAYYVQ 423
+DD +LE S+ + DYR+ E + A+ ++A Y+Q
Sbjct: 1305 ALLDD---LLEISQNHSQKDYRNMEGSLVLAMKLVAKVYLQ 1342
>05_03_0633 +
16416913-16417009,16417976-16418060,16418398-16418551,
16418808-16419023,16419105-16419241,16419317-16419408,
16419622-16419804,16421722-16421819,16422021-16422070,
16424605-16424756,16424944-16425069,16426315-16426523
Length = 532
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 295 KQKKIDDFLKILEASRTDANIDYRDFERDQMRALDMLAA 411
KQ ID +L S D +D +FE +++ A+D++ +
Sbjct: 141 KQFVIDGNKVVLSVSNADTKVDDAEFEENEVYAIDIVTS 179
>01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-336498,
336577-336734,337180-337310,337385-337472,337587-337690,
338346-338444,339060-339116,339262-339337,339519-339602,
339969-340010,340128-340198,341516-341564,342370-342441,
343149-343286,343393-343473,344166-344353,344591-345188,
345274-345342,346729-346854,347048-347175,347986-348142,
348342-348388,348472-348535,348691-348765,349292-349414,
349797-349982,351179-351303,351390-351459,351974-352101,
352585-352726,353065-353163,353239-353285,353598-353652,
353758-353967,354686-354757,354836-354905,355231-355414,
355521-355644,355732-355863,356252-356317,356805-356852,
357572-357676,357728-357865,358097-358399,358482-358594,
359082-359148,359236-359310,359395-359517,359610-359618,
360156-360320,360401-360502,361545-361696,361794-361995,
362079-362126,362215-362298,362613-362657,363302-363385,
363890-363970,364044-364133,364217-364279,364824-364841,
365238-365378,365494-365550,366091-366185,366275-366383,
367067-367156,367308-367387,367480-367558,367742-367903,
368005-368136,368335-368469,368553-368618,369317-369457,
369575-369648,369685-369910
Length = 2905
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 244 QERSQLNVW-INVALAYYKQKKIDDFLKILEASRTDANIDY 363
+ER N W + L YK K++D +K L++S DY
Sbjct: 2188 EERLSSNEWQAALRLRKYKSKELDTLMKRLKSSSKSEKTDY 2228
>06_03_1313 - 29252335-29252446,29253430-29253671,29253770-29253848,
29254991-29255130,29255262-29255571,29255810-29255952,
29256106-29256306,29256453-29256581,29256921-29257199,
29258036-29259720,29261255-29261764,29261901-29262108,
29264347-29264458,29264594-29264763
Length = 1439
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/43 (23%), Positives = 18/43 (41%)
Frame = +2
Query: 338 HVQMPTLTIGISKEIRCGLSTCWPHTMCKKLTKRSPKIRKKNY 466
H + +L I + ++C CW H +C R + + Y
Sbjct: 883 HEHINSLRQWIGQWVQCDKCECWQHQICALFNARRNDVEEAEY 925
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,268,579
Number of Sequences: 37544
Number of extensions: 228900
Number of successful extensions: 612
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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