Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_C22
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC589.11 |mug82||translation release factor |Schizosaccharomyc...    51   2e-07
SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom...    27   1.8  
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    27   2.4  
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|...    27   2.4  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    27   2.4  
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo...    27   2.4  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    26   5.5  
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz...    25   7.3  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    25   7.3  
SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces p...    25   7.3  
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...    25   9.6  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    25   9.6  
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    25   9.6  

>SPAC589.11 |mug82||translation release factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 182

 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
 Frame = +1

Query: 304 KLDISYSASSGPGGQNVNKVHTKVDLRFKLSDADWIHPDI---RQRMLELYDKKLTKEGY 474
           ++ IS+S SSGPGGQNVNK++TKV +       +   P       +  E+      + G 
Sbjct: 48  QVQISFSRSSGPGGQNVNKLNTKVIVNLPFKQLESCIPMFLINHFKTCEMLRNYRIQNG- 106

Query: 475 LIIKSDCTRSQQLNLADCMRKLRNMIRDAEVTKREPSPETQERIRXRQLK 624
           + I S  TRSQ  N+ D + K+ +++  +  T   P    ++  R   LK
Sbjct: 107 IKIYSQKTRSQHKNIEDALNKISDLLNKSAETLYVPDTPPEKIARISILK 156


>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 260

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -1

Query: 155 GFLIKPRIKFKRNVAKVILKENLSNITHKNKDLT 54
           GF  +P +K++R +  + L++  +N+THK   +T
Sbjct: 159 GFTRRP-VKYERFIRPMALRQKKANVTHKELGVT 191


>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 434 ILCLISGCIQSASLNLN 384
           I C++ GC++S  LNLN
Sbjct: 245 ICCILFGCVKSGDLNLN 261


>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 368

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 434 ILCLISGCIQSASLNLN 384
           I C++ GC++S  LNLN
Sbjct: 212 ICCILFGCVKSGDLNLN 228


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 254 HLNLMGMKNSQDSYQYRNWIYHT 322
           H + +  K++QDS   RNW+ H+
Sbjct: 13  HRSFLQPKDTQDSQDLRNWVSHS 35


>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
           Tip1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 256 FKPDGNEKFSGFIPIQKLDISYSASSGP 339
           FK   NEK   F+P  K  ++ S SS P
Sbjct: 56  FKTKNNEKTGIFVPFDKCKLASSISSSP 83


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 256  FKPDGNEKFSGFIPIQKLDISYSASSGPG 342
            + P+ N +F+G  P+    IS   SS PG
Sbjct: 1392 YNPESNMEFTGLKPLSPSKISNLPSSQPG 1420


>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
           Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = +1

Query: 418 DIRQRMLELYDKKLTKEGYLIIKSDCTRSQQLNLADCMRKLRNMIRDAEVTKREPSPET 594
           D+R+R  + YD    KE       +  R+ Q   A+  R+  N +R+ +   +    ET
Sbjct: 97  DLRERERQFYDSLEKKENERDRLQEKLRALQEESANLRRQRENRLREEQEQSKRRKQET 155


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 493 CTRSQQLNLADCMRKLRNMIRDAEVTKREPS-PETQERIR 609
           CT   Q+N  D +  L+ ++R A +T  EPS P T   ++
Sbjct: 221 CTLFPQMNDWDKVVALKTLVRYARLTLPEPSTPSTHSDLK 260


>SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 271 NEKFSGFIPIQKLDISYSASSGPGGQNVNKVHTKVDL 381
           N++ S      ++ I    S G GGQ+VN+  + V L
Sbjct: 245 NDESSSLYDSSEVKIEVMRSRGAGGQHVNRTESAVRL 281


>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +3

Query: 171 TPEASGIQEFHSIG 212
           TP ASGI ++H++G
Sbjct: 204 TPNASGISQYHALG 217


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
 Frame = +1

Query: 331 SGPGGQNVNKVHTKVDLRFKLSDADWIHPDIRQRMLELYDKKLTKEGYLIIKSD---CTR 501
           +GPGG+     H  ++ R++ +  D I  ++R  +  L      + G  +   D    T 
Sbjct: 254 AGPGGKPKKTAHNMIEKRYRTNLNDRI-CELRDAVPSLRAAAALRCGNSLDDEDLGGLTP 312

Query: 502 SQQLNLADCMRKLRNMIRDAEVTKRE 579
           +++LN    + K    IR  E   +E
Sbjct: 313 ARKLNKGTILAKATEYIRHLEAKNKE 338


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 127 NFIRGLIKNPTCTALLQRPLGYKSSIALETLY 222
           N ++ LI N     LLQ PL    S A+E+LY
Sbjct: 411 NLLQYLILNSISIFLLQHPLFAPLSHAIESLY 442


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,521,720
Number of Sequences: 5004
Number of extensions: 50211
Number of successful extensions: 149
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)