Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_C13
         (578 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81086-4|CAB03117.1|  342|Caenorhabditis elegans Hypothetical pr...    30   1.0  
Z74027-2|CAA98420.1|  210|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AF324058-1|AAK01419.1|  210|Caenorhabditis elegans Ly-6-related ...    30   1.4  
AC006648-5|AAF39853.1|  701|Caenorhabditis elegans Hypothetical ...    29   1.8  
Z68227-9|CAA92514.1|   64|Caenorhabditis elegans Hypothetical pr...    28   4.2  
AF068709-6|AAC19249.1|  319|Caenorhabditis elegans Serpentine re...    28   5.5  
U41535-3|AAB63403.2|  266|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>Z81086-4|CAB03117.1|  342|Caenorhabditis elegans Hypothetical
           protein F53B6.4 protein.
          Length = 342

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = +1

Query: 175 KAPKKESKVDGRRRSSPQTEAKRITE----GTSGSQGEGNSKR 291
           K+ +  SK    RRSS    +KR ++    GTSG  G+G+SKR
Sbjct: 89  KSTRGASKSGKSRRSSKAKHSKRSSKSSKKGTSGKSGKGSSKR 131


>Z74027-2|CAA98420.1|  210|Caenorhabditis elegans Hypothetical
           protein C13G3.2 protein.
          Length = 210

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 458 RILLTYFNMISFEYVICICKNVYYNIFQFVKI 553
           R L  Y N +S +YV+C C   Y N  +  ++
Sbjct: 126 RSLPMYSNTVSMDYVVCTCNGDYCNTMEMPEV 157


>AF324058-1|AAK01419.1|  210|Caenorhabditis elegans Ly-6-related
           protein HOT-6 protein.
          Length = 210

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 458 RILLTYFNMISFEYVICICKNVYYNIFQFVKI 553
           R L  Y N +S +YV+C C   Y N  +  ++
Sbjct: 126 RSLPMYSNTVSMDYVVCTCNGDYCNTMEMPEV 157


>AC006648-5|AAF39853.1|  701|Caenorhabditis elegans Hypothetical
           protein F59H6.2 protein.
          Length = 701

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 172 CKAPKKESKVDGRRRSSPQTEAKRITEGTSGSQGEGNSKRSTYP 303
           C+ PK ++K++  R   P      +T  T G Q  GN +   +P
Sbjct: 253 CQTPKYKAKLEESRAKYPDIVTLFLTFNTDGCQKRGNVRGQIWP 296


>Z68227-9|CAA92514.1|   64|Caenorhabditis elegans Hypothetical
           protein F49C12.11 protein.
          Length = 64

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/28 (42%), Positives = 21/28 (75%)
 Frame = +2

Query: 137 MSGREGGKKKTPVKHPRRSPR*MDEDDL 220
           MSGR+GGK K P+K  +++ + + E+D+
Sbjct: 1   MSGRQGGKAK-PLKAAKKTEKDLSEEDV 27


>AF068709-6|AAC19249.1|  319|Caenorhabditis elegans Serpentine
           receptor, class t protein27 protein.
          Length = 319

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 383 YFISSLAV*YNMYXVVFAETRFFQARILLTYFNMISF 493
           Y + +L V Y MY V+F     F ++ L  +FN + F
Sbjct: 153 YGVLTLPVIYGMYFVIFTTPIAFSSKHLTWFFNPLIF 189


>U41535-3|AAB63403.2|  266|Caenorhabditis elegans Hypothetical
           protein F18A1.7 protein.
          Length = 266

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 460 SCLKKSSFCKHNXIHIVLNSQTRY 389
           +CLKK  +C HN +    +S   Y
Sbjct: 92  TCLKKEQYCDHNKLFAKASSSVEY 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,184,673
Number of Sequences: 27780
Number of extensions: 207139
Number of successful extensions: 544
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)