Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_C11
(621 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC087079-3|AAK27862.1| 82|Caenorhabditis elegans Hypothetical ... 48 5e-06
AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein. 32 0.29
AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp ge... 32 0.29
AL033514-7|CAA22114.1| 648|Caenorhabditis elegans Hypothetical ... 30 1.5
AF016674-3|AAB66128.1| 558|Caenorhabditis elegans Hypothetical ... 29 2.0
Z81058-7|CAB02920.1| 1011|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z48006-3|CAB62803.1| 449|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z48006-2|CAA88050.1| 495|Caenorhabditis elegans Hypothetical pr... 29 2.7
U40413-6|AAK39173.2| 356|Caenorhabditis elegans Hypothetical pr... 28 4.7
U64857-15|AAC25858.1| 470|Caenorhabditis elegans Hypothetical p... 27 8.2
>AC087079-3|AAK27862.1| 82|Caenorhabditis elegans Hypothetical
protein Y37E3.4 protein.
Length = 82
Score = 48.0 bits (109), Expect = 5e-06
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Frame = +1
Query: 241 MTRGNQRDLARAKNQKKQVEMQKKKNASEK---TGLSLQERKHRGC*INARKTTKKRGRV 411
MTRGNQRDLAR KNQKK + +K++ AS + GLS+ R +R + K K +
Sbjct: 1 MTRGNQRDLAREKNQKKLADQKKRQGASGQDGNAGLSMDARMNRDADVMRIKQEKAAAKK 60
Query: 412 SSKETS*ASS 441
++ + A++
Sbjct: 61 EAEAAAAAAN 70
>AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein.
Length = 1359
Score = 32.3 bits (70), Expect = 0.29
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +1
Query: 262 DLARAKNQKKQVEMQKKKNASEKTGLSLQERKHRGC*INARKTTKKRGRVSSK 420
D R + KK+ + KK+ +SE + S +ERK + N K+ KKR S +
Sbjct: 133 DEEREQKSKKKSKKTKKQTSSESSEESEEERKVKKSKKNKEKSVKKRAETSEE 185
>AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp gene
related protein 1 protein.
Length = 1359
Score = 32.3 bits (70), Expect = 0.29
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +1
Query: 262 DLARAKNQKKQVEMQKKKNASEKTGLSLQERKHRGC*INARKTTKKRGRVSSK 420
D R + KK+ + KK+ +SE + S +ERK + N K+ KKR S +
Sbjct: 133 DEEREQKSKKKSKKTKKQTSSESSEESEEERKVKKSKKNKEKSVKKRAETSEE 185
>AL033514-7|CAA22114.1| 648|Caenorhabditis elegans Hypothetical
protein Y75B8A.7 protein.
Length = 648
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +1
Query: 244 TRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERKHR 363
+R + + +KK++E KK+ A +K LSL + K++
Sbjct: 246 SRETVAETEKMNGEKKKIEKDKKRKAGDKADLSLDDGKNK 285
>AF016674-3|AAB66128.1| 558|Caenorhabditis elegans Hypothetical
protein C03H5.5 protein.
Length = 558
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +1
Query: 226 NYLIRMTRGNQRDLARAKNQKKQVEMQKKKNASEKTG-LSLQERKHRGC*INARKTTKKR 402
N L + + + DLAR K +K+ E Q K ++TG L + + ++ G I T +R
Sbjct: 8 NRLHQKIKKLKEDLAREKELRKEAERQLKVLLDKQTGSLEITKPENIGLFITPEPQTSRR 67
Query: 403 GRVSSKETS*ASSKLISYL 459
+ A+SK +S L
Sbjct: 68 -PIKDNSAKPANSKTMSEL 85
>Z81058-7|CAB02920.1| 1011|Caenorhabditis elegans Hypothetical
protein F11E6.7 protein.
Length = 1011
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = -3
Query: 148 PVET*DNAPPSISPIGVKLEKKLLAIISVYNTKATHRRQPAGHNQKT 8
P+ET DN+PP+ I +L K + NT + QPA + QKT
Sbjct: 770 PMETKDNSPPANEVIAQELPK----ASPISNTPSVESTQPALNVQKT 812
>Z48006-3|CAB62803.1| 449|Caenorhabditis elegans Hypothetical
protein F19C6.2b protein.
Length = 449
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +1
Query: 250 GNQRDLARAKNQKKQVEMQKKKNASEK 330
GN+ D + AK KKQV +KK+NA K
Sbjct: 301 GNEDDSSNAKYAKKQVFKKKKRNAFGK 327
>Z48006-2|CAA88050.1| 495|Caenorhabditis elegans Hypothetical
protein F19C6.2a protein.
Length = 495
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +1
Query: 250 GNQRDLARAKNQKKQVEMQKKKNASEK 330
GN+ D + AK KKQV +KK+NA K
Sbjct: 347 GNEDDSSNAKYAKKQVFKKKKRNAFGK 373
>U40413-6|AAK39173.2| 356|Caenorhabditis elegans Hypothetical
protein C18B2.2 protein.
Length = 356
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 235 IRMTRGNQRDLARAKNQKKQVE-MQKKKNASEKTGLSL 345
+ M+ ++ L R N + ++ +QKK NASE TG SL
Sbjct: 148 MNMSEWDKESLCRGDNTFRHLKSLQKKYNASEMTGWSL 185
>U64857-15|AAC25858.1| 470|Caenorhabditis elegans Hypothetical
protein C37C3.1 protein.
Length = 470
Score = 27.5 bits (58), Expect = 8.2
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Frame = +1
Query: 244 TRGNQRDLARAKNQKKQVEMQKKKNASE------KTGLSLQERKHRGC*INARKTTKKRG 405
+ N+R+L K++KK+ +K+K+ S+ K S +ER HR R+ KKR
Sbjct: 404 SNSNERNLKEKKDRKKKKSEKKRKHHSKSRKHRSKRSESREER-HRRRKEKKREKKKKRR 462
Query: 406 RVSS 417
R SS
Sbjct: 463 RRSS 466
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,025,722
Number of Sequences: 27780
Number of extensions: 217054
Number of successful extensions: 558
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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