Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_C08
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 49 7e-07
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po... 36 0.007
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 27 1.8
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ... 27 1.8
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 27 2.4
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 27 2.4
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 27 3.1
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ... 26 4.1
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 26 4.1
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 26 5.5
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi... 25 7.2
SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr 3... 25 9.5
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 25 9.5
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 48.8 bits (111), Expect = 7e-07
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Frame = +1
Query: 145 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVAN----ESLRGGDLATQARVWQW 312
N D KFP K+P F DG L+E+ AIA+Y+A+ +L G +A+V Q+
Sbjct: 38 NFPADLAAKFPLQKMPVFVGKDG-FPLSETLAIAFYLASLNKTRALNGTTAEEKAKVLQY 96
Query: 313 ASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFL 474
S+++SEL A + P + +++Q + A++ + D L ++T+L
Sbjct: 97 CSFTNSELPGAFRPIIAPRVFGAPYDEQAAKEAETAIALIFARFDEELASKTYL 150
Score = 31.5 bits (68), Expect = 0.11
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +2
Query: 473 LVTERITLADVIVFSTLLHAFQHVLXPSVRSSLINVXRWFLTVAHXPQVSAVVGSL 640
LV R+TLAD+ L +VL S + ++ R++ T+ H ++ A+ L
Sbjct: 150 LVGSRLTLADIFFTCFLKFGATYVLTKSYLAKYTHIYRYYQTIYHQAKLDAITEPL 205
>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 220
Score = 35.5 bits (78), Expect = 0.007
Identities = 35/158 (22%), Positives = 67/158 (42%), Gaps = 8/158 (5%)
Frame = +1
Query: 25 MAAGVLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFES 204
M G LY++ N R L A+ V + + S D KFP K+P F
Sbjct: 1 MFLGTLYSFKTNTRTVCLLELAKLLDLQVDLVETYPH---KFSADLAAKFPLQKLPVFIG 57
Query: 205 ADGKVLLTESNAIAYYVA------NESLRGGDLATQARVWQWASWSDSELL-PASC-AWV 360
ADG L + Y+ E L + +A + +W + + +++ P + WV
Sbjct: 58 ADGFELSEVIAIVKYFYEKGKHNDKEGLGPVNEVEEAEMLKWMCFINFDIVTPQNVRPWV 117
Query: 361 FPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFL 474
+ G + + ++ + + + + +LK+ + + RT+L
Sbjct: 118 GMFRGNIPYEEKPFKESATRAIDSLKIPNELVKDRTYL 155
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +2
Query: 488 ITLADVIVFSTLLHAFQHVLXPSVRSSLINVXRWFLTVAHXPQVSAVVGSLTL 646
I++AD+ V++ + H++ L L NV RWF + H V S+++
Sbjct: 144 ISVADLAVYARI-HSYICGLSAKEGYKLNNVCRWFDFIQHQESVMEAANSMSM 195
>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 267
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 281 IWLPKPVSGSGHHGLTVNYCL-LPVLGSSLTLV 376
+W+P PV SG T+ C+ LP G +T V
Sbjct: 23 LWVPTPVGRSGRKHRTLKMCIVLPDTGYDVTQV 55
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -1
Query: 546 STCWKACSSVLKTMTSASVILSVTKEGACEKMSVQYF 436
ST W A ++ ++ + + I + AC++ S+QYF
Sbjct: 317 STAWYAMANRMRGKLNVAHINCAVSKRACKQYSIQYF 353
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.1 bits (57), Expect = 2.4
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +1
Query: 52 PENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTE 231
P F++ KA + QY+ +FG +K ++F K+ ++ F S + +L+
Sbjct: 553 PNYFKSLKAELNRQYAAAVNSGTRPLLFGSLSKYQNFTKEKLESEIVRF-SFEHSILINT 611
Query: 232 SN 237
SN
Sbjct: 612 SN 613
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 419 TYWPP*KYWTDIFSHAPSLVT 481
TY PP Y D+FS APS+ +
Sbjct: 257 TYLPPFNYDHDVFSFAPSVAS 277
>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 221 STFPSALSNAGTFPAGNFFKKSSDL 147
+TFP A + GTFP G F S L
Sbjct: 52 ATFPWAQAPVGTFPIGQLFDPVSGL 76
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 232 SNAIAYYVANESLRGGDLATQARVWQWAS 318
S + A Y+ NE+LR G + +R+W AS
Sbjct: 780 STSSAVYIKNENLRKGFVLGISRIWVSAS 808
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 329 VNYCLLPVLGSSLTLVSCNSTNRML 403
V + L+P LG L + SCN+ R L
Sbjct: 259 VTHALVPELGLQLAMASCNALLRYL 283
>SPAC1002.16c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 284 WLPKPVSGSGHHGLTVNYCLLPV 352
+LP +SG G+ L+V Y +PV
Sbjct: 308 FLPAIISGMGYTSLSVQYMTIPV 330
>SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 158
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 272 AEEIWLPKPVSGSGHH 319
A +IWL PVSG H+
Sbjct: 101 AHQIWLSSPVSGPKHY 116
>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 568
Score = 25.0 bits (52), Expect = 9.5
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +1
Query: 28 AAGVLYTYPENFRAYKALIAAQYSG-TDVKVAPNFV-FGE 141
A G +YT E+FRA K+L S T V+ FV FGE
Sbjct: 329 ALGSVYTIQESFRAEKSLTRRHLSEFTHVEFELPFVNFGE 368
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,838,610
Number of Sequences: 5004
Number of extensions: 60201
Number of successful extensions: 187
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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