Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_C07
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    27   1.8  
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom...    26   5.5  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    25   7.2  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    25   7.2  
SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual             25   9.5  

>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +2

Query: 98  SDLLVQYLK-KTKKCREKERISHRRLINVLKRILMMTIFILMTRNPTQVA 244
           SD+  +Y K KTK  RE   +++RR   +LK +  +   + M R PT ++
Sbjct: 508 SDVATEYWKIKTKDIRESHILNNRR---ILKSLQFIETELPMIRKPTAMS 554


>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 412

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -2

Query: 575 VLCWIYNSVLERQRSIFV-ILHSLXCRHV 492
           +LC +YNS+L +QR I + +L    C ++
Sbjct: 1   MLCLVYNSILCKQRRISLKVLQQFRCWNI 29


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 20/65 (30%), Positives = 27/65 (41%)
 Frame = +1

Query: 346 VPADTKLSKLDTLRLAASYIAHLRALLHEPRSAHTPPHPLSLGLAFRVPTWRQXKLCSIT 525
           +P DT  +   + RL  S + +LR  L +   A   P    +GL F V       L S  
Sbjct: 565 LPLDTLYNNKLSFRLDESLVRYLRFELMKTSLASLSPDFDCIGLQFVVGVSASSHLASQW 624

Query: 526 KMERW 540
           K E W
Sbjct: 625 KDEVW 629


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -1

Query: 150 SFSRHFFVFFKYCTSKSLQTHNC-LYLINFLKRIKCEA*DPVARQVKFS 7
           SFS HFF    + TS    TH C   +I  L+  +    D  A  +KFS
Sbjct: 272 SFSLHFFALQFFSTSLIQYTHICRKCVITILQSYQQLIVDQPANLLKFS 320


>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 264

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 476 WPFAFQHGGSXNCAVSQRW 532
           WP A Q GG  N + +Q W
Sbjct: 79  WPGALQIGGGINISNAQNW 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,306,010
Number of Sequences: 5004
Number of extensions: 42959
Number of successful extensions: 96
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)