Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_C07
(654 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41110-3|AAA82418.1| 170|Caenorhabditis elegans Helix loop heli... 43 2e-04
U58732-4|AAB00595.1| 147|Caenorhabditis elegans Helix loop heli... 38 0.005
AF369899-1|AAK72958.1| 147|Caenorhabditis elegans Fer3-like pro... 38 0.005
U51999-7|AAA96089.1| 89|Caenorhabditis elegans Helix loop heli... 38 0.008
Z47356-3|CAA87416.1| 268|Caenorhabditis elegans Hypothetical pr... 35 0.044
U40421-1|AAA81437.2| 178|Caenorhabditis elegans Helix loop heli... 35 0.044
AF037063-1|AAC26105.1| 178|Caenorhabditis elegans twist protein. 35 0.044
U10402-7|AAA19069.1| 192|Caenorhabditis elegans C. elegans neur... 35 0.058
AC084158-30|AAK68574.1| 184|Caenorhabditis elegans Neurogenin p... 34 0.077
Z69787-9|CAA93634.1| 226|Caenorhabditis elegans Hypothetical pr... 32 0.31
Z68338-5|CAA92758.1| 203|Caenorhabditis elegans Hypothetical pr... 28 5.0
U78953-1|AAB38323.1| 185|Caenorhabditis elegans basic helix-loo... 28 5.0
Z81047-2|CAB02828.1| 376|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z99281-39|CAE45094.2| 665|Caenorhabditis elegans Hypothetical p... 27 8.8
Z99281-38|CAE45095.2| 845|Caenorhabditis elegans Hypothetical p... 27 8.8
Z99281-36|CAB16527.3| 862|Caenorhabditis elegans Hypothetical p... 27 8.8
Z99281-34|CAJ44243.1| 917|Caenorhabditis elegans Hypothetical p... 27 8.8
Z93393-19|CAC70107.3| 971|Caenorhabditis elegans Hypothetical p... 27 8.8
Z83229-4|CAD89896.1| 971|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z81581-2|CAD56595.1| 672|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z81581-1|CAD56594.1| 655|Caenorhabditis elegans Hypothetical pr... 27 8.8
U28733-2|AAA68303.3| 381|Caenorhabditis elegans Hypothetical pr... 27 8.8
AY611484-1|AAT37523.1| 917|Caenorhabditis elegans epidermal gro... 27 8.8
AF106575-15|AAC78164.2| 350|Caenorhabditis elegans Serpentine r... 27 8.8
AF014939-5|AAB63928.2| 302|Caenorhabditis elegans Hypothetical ... 27 8.8
>U41110-3|AAA82418.1| 170|Caenorhabditis elegans Helix loop helix
protein 10 protein.
Length = 170
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/43 (51%), Positives = 31/43 (72%)
Frame = +1
Query: 304 LSKAFCRLKTTLPWVPADTKLSKLDTLRLAASYIAHLRALLHE 432
LSK F +L+ LP + D K+SKL TL++A+SYI +L A+L E
Sbjct: 105 LSKMFDQLRVCLP-IEDDAKISKLATLKVASSYIGYLGAILQE 146
>U58732-4|AAB00595.1| 147|Caenorhabditis elegans Helix loop helix
protein 13 protein.
Length = 147
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = +1
Query: 304 LSKAFCRLKTTLPWVPADTKLSKLDTLRLAASYIAHLRALLHEPRSA 444
++ AF L+ +P P + +LSK+DTL LA +YI L +L P +
Sbjct: 57 INVAFIELRNYIPTFPYEKRLSKIDTLNLAIAYINMLDDVLRTPEDS 103
>AF369899-1|AAK72958.1| 147|Caenorhabditis elegans Fer3-like
protein.
Length = 147
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = +1
Query: 304 LSKAFCRLKTTLPWVPADTKLSKLDTLRLAASYIAHLRALLHEPRSA 444
++ AF L+ +P P + +LSK+DTL LA +YI L +L P +
Sbjct: 57 INVAFIELRNYIPTFPYEKRLSKIDTLNLAIAYINMLDDVLRTPEDS 103
>U51999-7|AAA96089.1| 89|Caenorhabditis elegans Helix loop helix
protein 15 protein.
Length = 89
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/38 (44%), Positives = 26/38 (68%)
Frame = +1
Query: 313 AFCRLKTTLPWVPADTKLSKLDTLRLAASYIAHLRALL 426
AF +L+ LP +P + KLSK++ LR + +YI+ L LL
Sbjct: 51 AFSQLRALLPTLPVEKKLSKIEILRFSIAYISFLDNLL 88
>Z47356-3|CAA87416.1| 268|Caenorhabditis elegans Hypothetical
protein T15H9.3 protein.
Length = 268
Score = 35.1 bits (77), Expect = 0.044
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = +1
Query: 295 MRVLSKAFCRLKTTLPWVPADTKLSKLDTLRLAASYIAHLRALL 426
+R ++ + RL+ LP + ++SK+DTLRLA YI HL LL
Sbjct: 186 VRNVNDGYERLRKHLPVHFDEKRISKVDTLRLAIRYIKHLDNLL 229
>U40421-1|AAA81437.2| 178|Caenorhabditis elegans Helix loop helix
protein 8 protein.
Length = 178
Score = 35.1 bits (77), Expect = 0.044
Identities = 17/37 (45%), Positives = 26/37 (70%)
Frame = +1
Query: 304 LSKAFCRLKTTLPWVPADTKLSKLDTLRLAASYIAHL 414
L+ AF L+ +P +P+D K+SK+ TLR+A YI+ L
Sbjct: 36 LNDAFTLLRKLIPSMPSD-KMSKIHTLRIATDYISFL 71
>AF037063-1|AAC26105.1| 178|Caenorhabditis elegans twist protein.
Length = 178
Score = 35.1 bits (77), Expect = 0.044
Identities = 17/37 (45%), Positives = 26/37 (70%)
Frame = +1
Query: 304 LSKAFCRLKTTLPWVPADTKLSKLDTLRLAASYIAHL 414
L+ AF L+ +P +P+D K+SK+ TLR+A YI+ L
Sbjct: 36 LNDAFTLLRKLIPSMPSD-KMSKIHTLRIATDYISFL 71
>U10402-7|AAA19069.1| 192|Caenorhabditis elegans C. elegans neuro d
homolog protein1 protein.
Length = 192
Score = 34.7 bits (76), Expect = 0.058
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Frame = +1
Query: 295 MRVLSKAFCRLKTTLPWVPADTKLSKLDTLRLAASYIAHLRALLHEPRSAHTP---PHPL 465
M L+ A L+ +P KLSK++TLRLA +YI L+ +L + TP H L
Sbjct: 32 MHGLNNALDMLREYIPITTQHQKLSKIETLRLARNYIDALQRML-QTNEQPTPLEYAHTL 90
Query: 466 SLGLA 480
+ GL+
Sbjct: 91 ANGLS 95
>AC084158-30|AAK68574.1| 184|Caenorhabditis elegans Neurogenin
protein 1 protein.
Length = 184
Score = 34.3 bits (75), Expect = 0.077
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +1
Query: 295 MRVLSKAFCRLKTTLPWVPADTKLSKLDTLRLAASYIAHL 414
M L+ A L+ LP +P + K++K++TLR A YIA L
Sbjct: 75 MNSLNDALEHLRGILPALPDEPKMTKIETLRKAQEYIASL 114
>Z69787-9|CAA93634.1| 226|Caenorhabditis elegans Hypothetical
protein C44C10.8 protein.
Length = 226
Score = 32.3 bits (70), Expect = 0.31
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = +1
Query: 304 LSKAFCRLKTTLPWVPADTK--LSKLDTLRLAASYIAHLRALL 426
++ AF L+ +P++ ++ + L K+ TLRLA YI HL+ LL
Sbjct: 39 INSAFEILQQHIPYLKSEERKSLPKIKTLRLAMQYIDHLKKLL 81
>Z68338-5|CAA92758.1| 203|Caenorhabditis elegans Hypothetical
protein T24B8.6 protein.
Length = 203
Score = 28.3 bits (60), Expect = 5.0
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +1
Query: 304 LSKAFCRLKTTLPWVPAD-TKLSKLDTLRLAASYIAHLRALLHEPRSAHTPPHPLSLGLA 480
+++ F L+ +P + KLSK++TLR AA YI L+ L ++ P
Sbjct: 75 VNQGFVLLQERVPKAAGNKAKLSKVETLREAARYIQELQKQLGMSSTSFHNSMPADFPTP 134
Query: 481 FRVPTWRQXKLCSI 522
+ P + Q +CS+
Sbjct: 135 EQSPVYPQ-SVCSM 147
>U78953-1|AAB38323.1| 185|Caenorhabditis elegans basic
helix-loop-helix DNA bindingprotein HLH-3 protein.
Length = 185
Score = 28.3 bits (60), Expect = 5.0
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +1
Query: 304 LSKAFCRLKTTLPWVPAD-TKLSKLDTLRLAASYIAHLRALLHEPRSAHTPPHPLSLGLA 480
+++ F L+ +P + KLSK++TLR AA YI L+ L ++ P
Sbjct: 42 VNQGFVLLQERVPKAAGNKAKLSKVETLREAARYIQELQKQLGMSSTSFHNSMPADFPTP 101
Query: 481 FRVPTWRQXKLCSI 522
+ P + Q +CS+
Sbjct: 102 EQSPVYPQ-SVCSM 114
>Z81047-2|CAB02828.1| 376|Caenorhabditis elegans Hypothetical
protein C41G6.3 protein.
Length = 376
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = +2
Query: 23 LATGSQASHLIRFKKLIKYKQLCV*SDLLVQYLKKTKKCREKERISHRRLINVLKRILMM 202
++T ++ F I Y L + LLV LK K+ + +R N K IL M
Sbjct: 225 MSTWGFIEFIVNFSSAIIYPLLTI--SLLVALLKIKKRRQNNQRKESEPADNTTKLILFM 282
Query: 203 TIFILMT 223
TI +++
Sbjct: 283 TITFMLS 289
>Z99281-39|CAE45094.2| 665|Caenorhabditis elegans Hypothetical
protein Y57G11C.24e protein.
Length = 665
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -3
Query: 208 NRHHQYPLQNVYQP 167
N HHQ P QNVY+P
Sbjct: 433 NGHHQGPAQNVYRP 446
>Z99281-38|CAE45095.2| 845|Caenorhabditis elegans Hypothetical
protein Y57G11C.24d protein.
Length = 845
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -3
Query: 208 NRHHQYPLQNVYQP 167
N HHQ P QNVY+P
Sbjct: 613 NGHHQGPAQNVYRP 626
>Z99281-36|CAB16527.3| 862|Caenorhabditis elegans Hypothetical
protein Y57G11C.24a protein.
Length = 862
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -3
Query: 208 NRHHQYPLQNVYQP 167
N HHQ P QNVY+P
Sbjct: 630 NGHHQGPAQNVYRP 643
>Z99281-34|CAJ44243.1| 917|Caenorhabditis elegans Hypothetical
protein Y57G11C.24g protein.
Length = 917
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -3
Query: 208 NRHHQYPLQNVYQP 167
N HHQ P QNVY+P
Sbjct: 685 NGHHQGPAQNVYRP 698
>Z93393-19|CAC70107.3| 971|Caenorhabditis elegans Hypothetical
protein Y48E1B.14a protein.
Length = 971
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 344 QGRVVFS-LQNAFDKTRILARSRALAAFLCGSCELRPEL 231
Q R++FS + K RIL RS L AFL + E R L
Sbjct: 677 QHRLIFSTFLSTLSKQRILNRSELLLAFLSSNEEFRDTL 715
>Z83229-4|CAD89896.1| 971|Caenorhabditis elegans Hypothetical
protein Y48E1B.14a protein.
Length = 971
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 344 QGRVVFS-LQNAFDKTRILARSRALAAFLCGSCELRPEL 231
Q R++FS + K RIL RS L AFL + E R L
Sbjct: 677 QHRLIFSTFLSTLSKQRILNRSELLLAFLSSNEEFRDTL 715
>Z81581-2|CAD56595.1| 672|Caenorhabditis elegans Hypothetical
protein F08A10.1c protein.
Length = 672
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +2
Query: 428 TSHDQHIPHHIHLVW-AWP-FAFQHGGSXNCAVSQRWNVGAQEPS 556
TS+ H HI L P FA+ GG +CAVS + ++PS
Sbjct: 80 TSNHPHNQGHIQLTANGTPVFAYSGGGGGSCAVSPSSSARREDPS 124
>Z81581-1|CAD56594.1| 655|Caenorhabditis elegans Hypothetical
protein F08A10.1b protein.
Length = 655
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +2
Query: 428 TSHDQHIPHHIHLVW-AWP-FAFQHGGSXNCAVSQRWNVGAQEPS 556
TS+ H HI L P FA+ GG +CAVS + ++PS
Sbjct: 80 TSNHPHNQGHIQLTANGTPVFAYSGGGGGSCAVSPSSSARREDPS 124
>U28733-2|AAA68303.3| 381|Caenorhabditis elegans Hypothetical
protein C54A12.2 protein.
Length = 381
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +2
Query: 53 IRFKKLIKYKQLCV*SDLLVQYLKKTKKCREKERISHRRLINVLKRILMMTIF 211
I F L+ + + V + L++ L++TKK R I ++ N +L++TIF
Sbjct: 262 IIFDYLVPFVIMFVANMLIISELRRTKKERSLMTIQQQKEQNTTVMLLVITIF 314
>AY611484-1|AAT37523.1| 917|Caenorhabditis elegans epidermal growth
factor receptorpathway substrate 8 splice variant A
protein.
Length = 917
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -3
Query: 208 NRHHQYPLQNVYQP 167
N HHQ P QNVY+P
Sbjct: 685 NGHHQGPAQNVYRP 698
>AF106575-15|AAC78164.2| 350|Caenorhabditis elegans Serpentine
receptor, class w protein91 protein.
Length = 350
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +2
Query: 59 FKKLIKYKQLCV*SDLLVQYLKKTKKCREKERISHR-RLINVLKRILMMTIFILMTRNPT 235
F KLI L + + LLV LK+T+K R + ++ +++MT I + PT
Sbjct: 231 FSKLIPCIILPLLTTLLVVELKRTEKSRISSSVLYKNNTEKTTNLVIIMTFSIFLASLPT 290
Query: 236 QVA 244
+A
Sbjct: 291 GIA 293
>AF014939-5|AAB63928.2| 302|Caenorhabditis elegans Hypothetical
protein ZC132.6 protein.
Length = 302
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +2
Query: 98 SDLLVQYLKKTKKCREKERISHRRLINVLKRILMMTIFILMTRNPTQVAIRTSRTETQPM 277
+DLL Y+ +T+KC EK I I V + + + + R Q ++ +RT QP+
Sbjct: 8 ADLLDNYVTETQKCTEK--IDEIVEIIVAAQDIRDVLHATLKRAQQQSSVTMTRTTDQPV 65
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,078,676
Number of Sequences: 27780
Number of extensions: 251858
Number of successful extensions: 694
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -