Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_C07
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      40   2e-05
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    25   0.84 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.84 
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    24   1.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.4  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   4.5  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    22   6.0  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    22   6.0  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 39.9 bits (89), Expect = 2e-05
 Identities = 20/42 (47%), Positives = 29/42 (69%)
 Frame = +1

Query: 304 LSKAFCRLKTTLPWVPADTKLSKLDTLRLAASYIAHLRALLH 429
           L++AF  L+  +P +P+D KLSK+ TL+LA  YI  L  +LH
Sbjct: 269 LNEAFAALRKIIPTLPSD-KLSKIQTLKLATRYIDFLFQVLH 309


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 301 VLSKAFCRLKTTLPWVPADTKLSKLDTLRLAAS 399
           V++  FC +   L  V ADT+L+KL    +A +
Sbjct: 52  VINPFFCDMSPLLSLVCADTRLNKLAVFIVAGA 84


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 47  HLIRFKKLIKYKQLCV*SDLLVQYLKKTKKCREKERISHRRL 172
           HLI +KK++K K+L    D  +  + + K   EK +  ++ L
Sbjct: 435 HLIEYKKMLKIKRL-FGKDRKIMDMVREKIIEEKRKNKNKNL 475


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 301 VLSKAFCRLKTTLPWVPADTKLSKLDTLRLAAS 399
           V++  FC +  +L  + ADT+L+KL    +A +
Sbjct: 53  VINPFFCDMSPSLSLLCADTRLNKLAVFIVAGA 85


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = -3

Query: 349 APRVE*SSVCRMLLTKPAF-WPVLVHWLRFCAARANCDLSWIACHQNKNRHHQYP 188
           A  +E   +  +LLTK A   P+   ++       NC + W+    N+    +YP
Sbjct: 650 ANMIETMELTSLLLTKVAEDRPLPEFYIGGNPFNCNCSMDWLPGINNQTSTREYP 704


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/21 (33%), Positives = 16/21 (76%)
 Frame = -1

Query: 129 VFFKYCTSKSLQTHNCLYLIN 67
           V + +C +KSL+T + ++++N
Sbjct: 69  VIWIFCAAKSLRTPSNMFVVN 89


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 134 KCREKERISHRRLINVLK 187
           KC EK++ +  +++N LK
Sbjct: 74  KCNEKQKHTANKVVNYLK 91


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 134 KCREKERISHRRLINVLK 187
           KC EK++ +  +++N LK
Sbjct: 74  KCNEKQKHTANKVVNYLK 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,260
Number of Sequences: 438
Number of extensions: 3059
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)