Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_C06
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.2  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   2.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.1  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   6.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   6.5  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               21   6.5  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   6.5  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   8.6  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 278  GERAKLTCSPDYAYGQQGHPGVIPPNST 361
            GER  L  S DY Y  +G  G    +ST
Sbjct: 1579 GERVMLKASEDYRYSVRGLCGNFDHDST 1606


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +2

Query: 215 FRIGKSEVIRGWDEGVAKMSVGERAKLTCSP 307
           FRI   E  R W     K+ + +  KL C P
Sbjct: 249 FRIQVDECDRLWILDSGKVDIAKGGKLACPP 279


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 15/62 (24%), Positives = 26/62 (41%)
 Frame = -2

Query: 402 CIYSRRRSSTSKISVELGGMTPGWPC*P*A*SGEQVNLARSPTDIFATPSSQPRITSDFP 223
           C   R+  S S   +E G   P  P           + + +PT + ++P S+ +   D P
Sbjct: 568 CPRFRKLDSPSDSGIESGTEKPDKPA--------SSSASSAPTSVCSSPRSEDKEVEDMP 619

Query: 222 IL 217
           +L
Sbjct: 620 VL 621


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +2

Query: 134 TVVVHYTGTLTNGKKFDSSRDRGKPFKFRI 223
           T    +  T+ NG   +  R+  KPF  +I
Sbjct: 461 TYFEQFDTTINNGLLLEEQRNDDKPFLIKI 490


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +2

Query: 134 TVVVHYTGTLTNGKKFDSSRDRGKPFKFRI 223
           T    +  T+ NG   +  R+  KPF  +I
Sbjct: 461 TYFEQFDTTINNGLLLEEQRNDDKPFLIKI 490


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 22  ESEDLYLEKIEKYIVNNGCY 81
           + ED+    I+KY+ N  C+
Sbjct: 59  QEEDISEGNIKKYLTNYSCF 78


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/38 (18%), Positives = 17/38 (44%)
 Frame = +1

Query: 334 PWSHTSQLYTYFRCRTSTSRINTICNQKLLQHHCYVQL 447
           PW   +  +    C     R +  C  ++ +HH ++++
Sbjct: 97  PWGSCNNYWNTKNCVNPYDRDSLSCWLQMTKHHNFIKV 134


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 490 IKNNVISCDLEFQRAIEHNNDVV 422
           + NN +SC  E Q     N DVV
Sbjct: 320 LANNTLSCWNEHQSLDRQNIDVV 342


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,612
Number of Sequences: 438
Number of extensions: 3818
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)