Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_C01
(576 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 30 0.21
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ... 29 0.64
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|... 28 1.1
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos... 27 2.0
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 2.6
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 26 3.4
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 26 3.4
SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po... 26 4.5
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 26 4.5
SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch... 26 4.5
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 30.3 bits (65), Expect = 0.21
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 3/102 (2%)
Frame = -3
Query: 457 TPSIMLSLMLSP*VKRRTLITTCTMMITSKKIAYVTTMQ*LSRIAPQHPKNAITNITAPT 278
+PS+ LS + + + T++ S K T A P+N T IT+PT
Sbjct: 320 SPSVALSTSSTTTITNASTPAANTIISRSSKPTDTTNS---ISFANTTPENTSTQITSPT 376
Query: 277 TMKIHGP-TARWVFSKS--LTMVQFIRNATPIPTSSRPRSAT 161
+ P T+ V + S +T + +TPI +SS S+T
Sbjct: 377 AVNSSTPITSSSVLNSSTPITSSSILNTSTPITSSSVLNSST 418
>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 429
Score = 28.7 bits (61), Expect = 0.64
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 269 LHSRRGCNVRDRVLGMLWSDTRESLHGRHVRNLFAGDHH 385
L SRR N + +V WS+ E +H + RNLF + H
Sbjct: 12 LFSRRFPNWKRKVQTDSWSNVPEHIHSKIGRNLFQKEGH 50
>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
L7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 287
Score = 27.9 bits (59), Expect = 1.1
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -2
Query: 452 IHNALL-DALAVGEEEDADHHLHNDDHQQKD 363
+H+ +L D LA D D L D+H QKD
Sbjct: 56 LHDTILPDVLAASYRHDIDTALSTDEHTQKD 86
>SPBP35G2.05c |cki2||serine/threonine protein kinase
Cki2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 27.1 bits (57), Expect = 2.0
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Frame = -3
Query: 403 LITTCTMMITSKKIAYVTTMQ*LSRIAPQHPKNAITNITAPTTMKIHGPTAR---WVFSK 233
L C + K +A +T Q LSR+ H KN + P I P++R V+
Sbjct: 95 LFEWCGRRFSVKTVA-MTAKQMLSRVQTIHEKNLVYRDIKPDNFLIGRPSSRNANMVYMV 153
Query: 232 SLTMVQFIRNATP---IPTSSRPR-SATTRLKKNSTY 134
M ++ R+ IP S R S T R +T+
Sbjct: 154 DFGMAKYYRDPKTKQHIPYSERKSLSGTARYMSINTH 190
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 26.6 bits (56), Expect = 2.6
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 119 NEFCEICAILLQPGRRAPRPAASGDWSSVPDELDHGQR 232
+E E+ L+P RAPRP+ S S E+ H R
Sbjct: 77 DEKLEVDFAFLEPPERAPRPSISTRSRSQSPEVQHRDR 114
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 26.2 bits (55), Expect = 3.4
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = -2
Query: 410 EDADHHLHNDDHQQKDCVRDDHAVTLAYRSTASQERDHEHYSPDDY 273
E+ + N + Q+ DDH + SQE HEH D+
Sbjct: 505 EEFEEEKDNVEAQKMGYTNDDHVSQHEHTHENSQEHHHEHNHNHDH 550
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 26.2 bits (55), Expect = 3.4
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = -2
Query: 380 DHQQKDCVRDDHAVTLAYRSTASQER 303
D KD V DD VTL TA QER
Sbjct: 44 DFLTKDVVVDDKLVTLQLWDTAGQER 69
>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 361
Score = 25.8 bits (54), Expect = 4.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 331 RIAPQHPKNAITNITAPTTMKIHG 260
RI P P N + NIT P+T+ HG
Sbjct: 175 RIFP--PTNLVANITLPSTLHPHG 196
>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 286
Score = 25.8 bits (54), Expect = 4.5
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = -2
Query: 419 GEEEDADHHLHNDDHQQKDCVRDDH 345
G ++ HH H+ DH D DH
Sbjct: 10 GSDDSTHHHTHDYDHHNHDHHGHDH 34
>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
Yml6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 261
Score = 25.8 bits (54), Expect = 4.5
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -3
Query: 232 SLTMVQFIRNATPIPTSSRPRSATTRLKKNSTYFTKLVPHPML 104
SL + +F + T + +P S T + NS+ FTK P P L
Sbjct: 218 SLIVEKFAQRNT-LSDMDQPASLTAYVDANSSSFTKSKPEPSL 259
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,094,258
Number of Sequences: 5004
Number of extensions: 39775
Number of successful extensions: 139
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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