Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_C01
         (576 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    61   7e-12
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   6.6  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   6.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   8.7  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   8.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   8.7  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 61.3 bits (142), Expect = 7e-12
 Identities = 30/85 (35%), Positives = 41/85 (48%)
 Frame = +3

Query: 108 MGCGTSFVKYXXXXXXXXXXXXXXXXXXXXXXXXMNWTMVKDLLKTHLAVGPWIFIVVGA 287
           M CG   +KY                        +    V   ++T LA      IV+G+
Sbjct: 1   MSCGMGMIKYLLFIFNFVFAVCGLGILTLGVLIHLQILGVSKQIETGLAFPSITLIVLGS 60

Query: 288 VMFVIAFLGCCGAIRESHCMVVTYA 362
           ++FVI+F GCCGAIRESHCM +T+A
Sbjct: 61  IIFVISFFGCCGAIRESHCMTITFA 85


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +2

Query: 365  LFAGDHHCASGDQRPPLHLRREHQGEHYGWRRR 463
            L+       + DQ+P  +L  +   + YG RR+
Sbjct: 963  LYKSSESSCNPDQKPTEYLLEDSMKQQYGKRRK 995


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 144 IAHISQNSFHIPC*EHYFLFLFHN 73
           I + S +SF+IPC     +FL++N
Sbjct: 344 IIYSSLSSFYIPC--IIMVFLYYN 365


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = -2

Query: 452 IHNALLDALAVGEEEDADHHLHNDDHQQKDCVRDDHAVTLAYR 324
           +H+A  D + VGE+  A   L     + K  + + +    A R
Sbjct: 415 LHDATRDVILVGEQARAQDGLRRRMDKLKSSIEEANLAVSAER 457


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/19 (47%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
 Frame = -2

Query: 398 HHLHNDDHQ-QKDCVRDDH 345
           HHL N  H  Q   V+D H
Sbjct: 142 HHLQNHHHHLQSTAVQDHH 160


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = +2

Query: 398 DQRPPLHLRREHQGEHYGWR 457
           D RP   + +   G H+G R
Sbjct: 368 DSRPQYQIDKRSMGSHHGQR 387


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 93  FLFLFHNKHFT 61
           F FL+ NKHFT
Sbjct: 202 FGFLYLNKHFT 212


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 341 LHGRHVRNLFAGDHHCAS 394
           LH   ++N+   DHH AS
Sbjct: 349 LHSFQMKNVTIVDHHTAS 366


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 93  FLFLFHNKHFT 61
           F FL+ NKHFT
Sbjct: 202 FGFLYLNKHFT 212


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,464
Number of Sequences: 438
Number of extensions: 2975
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)