Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_B24
         (569 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    28   1.1  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    27   1.9  
SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi...    27   2.6  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   4.5  
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   5.9  

>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = -3

Query: 183 GSLRHCCTIYSSSLHLIYYF----CMH*RKFTTMVKHRTLRFSLLSNISINH 40
           G LR C + Y   LH IYYF      +  KF   +  +  R  L+ +IS+N+
Sbjct: 29  GLLRICRSSYVGGLHAIYYFPKLNPRNYHKFVDTISRKPTR-KLVHHISLNN 79


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 2/113 (1%)
 Frame = +1

Query: 172 SETPSSGSEDSECEQGPDPDDVALTEEW-ARELLADAGCGGSK*GAR*IQSRSNWSPEQG 348
           SE  S+ ++ SE  +   P +     EW   +   +A       G + +Q R  WS  + 
Sbjct: 88  SEAVSTSAKTSE--ETAKPSETREDGEWNTLKNTLEADAQNLMSGFQMLQRR--WSQPKT 143

Query: 349 S*LSQYAMSAVVNKNPCP*SSNYPRGIRSEDCSWLKPNSTREKSFST-QN*RR 504
           + L         +++P     N P G++S + +  KP+ T EK  +  QN RR
Sbjct: 144 TTLKTEVKEQQASQSPSVEGENEPAGVKSNEAT--KPSVTEEKEKNAEQNKRR 194


>SPAC27D7.06 |||electron transfer flavoprotein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 341

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 133 DQMQAGGIDSAAMSETPSSGSEDSECEQGPDPDDVALTEEWARE 264
           D ++   + ++A    PSSG   +   +G DP   AL +EW  E
Sbjct: 170 DPIKIVTVRASAFDAAPSSGEGAATVVEGIDPKPAAL-QEWVSE 212


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = -3

Query: 261 SGPFFS*GNVIGIGPLFTLRILASTAGSLRHC-CTIYSSSLHLIYYF---CMH 115
           S PFF     + + P +++    S    L H  C+IYS +LH  ++F   C H
Sbjct: 24  SVPFF----FLQMTPFYSILCFLSFFALLLHLPCSIYSHTLHFFHHFTIACYH 72


>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
 Frame = -3

Query: 264 FSGPFF-S*GNVIGIGP-----LFTLRILASTAGSLRHCCTIYSSSLHLIYYF 124
           F G F  S GN I + P     L+ L I  S A + + CC  YS +   IY+F
Sbjct: 303 FKGIFMQSFGNTIRLAPYTYDTLYPL-IQTSAAAAAKQCCGGYSGTSCGIYWF 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,277,033
Number of Sequences: 5004
Number of extensions: 43719
Number of successful extensions: 84
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)