Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_B14
         (529 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-2140|AAF53151.1|   69|Drosophila melanogaster CG6770-PA...   118   4e-27
AY089684-1|AAL90422.1|  370|Drosophila melanogaster RH61266p pro...    28   9.0  
AF420242-1|AAL16060.1|  826|Drosophila melanogaster RNA-directed...    28   9.0  

>AE014134-2140|AAF53151.1|   69|Drosophila melanogaster CG6770-PA
           protein.
          Length = 69

 Score =  118 bits (285), Expect = 4e-27
 Identities = 49/62 (79%), Positives = 56/62 (90%)
 Frame = +3

Query: 105 MSEAFFDEYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHN 284
           MSEA FDEY++YNFDHDKHIF+GH GKQR K+EA+EHTNHFDPSGHSRKI+TKLMN  +N
Sbjct: 1   MSEAHFDEYEHYNFDHDKHIFSGHSGKQRNKREANEHTNHFDPSGHSRKILTKLMNTNNN 60

Query: 285 KK 290
            K
Sbjct: 61  NK 62


>AY089684-1|AAL90422.1|  370|Drosophila melanogaster RH61266p
           protein.
          Length = 370

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +3

Query: 150 HDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKKTSNTK 305
           HD  I  GH G  RT  +   H    + + H ++ + +    + +K T++TK
Sbjct: 34  HDDPIQGGHTGITRTLAKIKRHYYWKNMTRHIKEYIRRCHKCQMSKTTTHTK 85


>AF420242-1|AAL16060.1|  826|Drosophila melanogaster RNA-directed
           DNA polymerase protein.
          Length = 826

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +3

Query: 150 HDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKKTSNTK 305
           HD  I  GH G  RT  +   H    + + H ++ + +    + +K T++TK
Sbjct: 490 HDDPIQGGHTGITRTLAKIKRHYYWKNMTRHIKEYIRRCHKCQMSKTTTHTK 541


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,578,209
Number of Sequences: 53049
Number of extensions: 473227
Number of successful extensions: 972
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1970722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)