Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_B13
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb... 91 1e-19
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 91 1e-19
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 83 4e-17
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha... 56 6e-09
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma... 56 6e-09
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 29 0.44
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 29 0.59
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 27 1.8
SPAC1687.14c |||EF hand family protein, unknown role|Schizosacch... 27 1.8
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch... 26 4.1
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 25 7.2
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz... 25 7.2
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 9.5
>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 141
Score = 91.5 bits (217), Expect = 1e-19
Identities = 47/116 (40%), Positives = 72/116 (62%)
Frame = +3
Query: 147 FQEAFQLFDSRGDGKIHVAQIGDALRALGQNPTESDVKKCTLHLKPDERISFEVFLPIYQ 326
+++AF LFD G G+I IGD LRA GQNPT +++ + L P E + E FL +
Sbjct: 8 YKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITEIESTL-PAE-VDMEQFLQVLN 65
Query: 327 AISKARSGDTANDFIEGLRHFDKDGNGFISSAELRHLLSTLGEKLSDDEVEQLLQG 494
+ +F++G + FDKD G I ELR++L++LGEKLS++E+++LL+G
Sbjct: 66 RPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKG 121
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 144 EFQEAFQLFDSRGDGKIHVAQIGDALRALGQNPTESDV 257
EF + FQ+FD G I V ++ L +LG+ + ++
Sbjct: 78 EFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEM 115
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 91.1 bits (216), Expect = 1e-19
Identities = 47/124 (37%), Positives = 76/124 (61%), Gaps = 2/124 (1%)
Frame = +3
Query: 126 SEDQLAEFQEAFQLFDSRGDGKIHVAQIGDALRALGQNPTESDVKKCTLHLKPDER--IS 299
+++Q+AEF+EAF LFD DG I ++G +R+LGQ+PT ++++ + D I
Sbjct: 7 TDEQIAEFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTID 66
Query: 300 FEVFLPIYQAISKARSGDTANDFIEGLRHFDKDGNGFISSAELRHLLSTLGEKLSDDEVE 479
F FL + K + D + E + FDKDGNG+I+ EL H+L++LGE+LS +EV
Sbjct: 67 FTEFLTMMAR--KMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVA 124
Query: 480 QLLQ 491
+++
Sbjct: 125 DMIR 128
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 82.6 bits (195), Expect = 4e-17
Identities = 44/122 (36%), Positives = 74/122 (60%)
Frame = +3
Query: 126 SEDQLAEFQEAFQLFDSRGDGKIHVAQIGDALRALGQNPTESDVKKCTLHLKPDERISFE 305
S++Q E +EAF L+D DG I + +G LR+LG N T++++ K + L + I +
Sbjct: 4 SKEQTDEMKEAFVLYDIDKDGLIPTSHVGSVLRSLGINVTDAELAKLSNEL--GDAIDEK 61
Query: 306 VFLPIYQAISKARSGDTANDFIEGLRHFDKDGNGFISSAELRHLLSTLGEKLSDDEVEQL 485
F+ +K R ++ ++I+ R FDKD +G+I +A+ + TLGEKLSD+EV+ +
Sbjct: 62 KFMSFVS--NKLRETESEEEYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLM 119
Query: 486 LQ 491
+Q
Sbjct: 120 VQ 121
Score = 35.5 bits (78), Expect = 0.007
Identities = 16/65 (24%), Positives = 35/65 (53%)
Frame = +3
Query: 144 EFQEAFQLFDSRGDGKIHVAQIGDALRALGQNPTESDVKKCTLHLKPDERISFEVFLPIY 323
E+ +AF++FD G I A+ D ++ LG+ ++++V+ P SF+ + +
Sbjct: 79 EYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLMVQEADPTNSGSFDYYDFVQ 138
Query: 324 QAISK 338
+ ++K
Sbjct: 139 RIMAK 143
>SPAC926.03 |rlc1||myosin II regulatory light chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 55.6 bits (128), Expect = 6e-09
Identities = 36/125 (28%), Positives = 59/125 (47%)
Frame = +3
Query: 117 AGYSEDQLAEFQEAFQLFDSRGDGKIHVAQIGDALRALGQNPTESDVKKCTLHLKPDERI 296
A + Q+ E +EAF L D GDG I + L +L Q+ +E + + P I
Sbjct: 40 AQLTSSQIQELKEAFALLDKDGDGNIGREDVKTMLTSLNQDASEDSINHMFESINPP--I 97
Query: 297 SFEVFLPIYQAISKARSGDTANDFIEGLRHFDKDGNGFISSAELRHLLSTLGEKLSDDEV 476
+ FL ++ S ND +E FD +G I + +R LS++G+++ EV
Sbjct: 98 NLAAFLTAMGSMLCRIS--PRNDLLEAFSTFDDTQSGKIPISTMRDALSSMGDRMDPQEV 155
Query: 477 EQLLQ 491
E +L+
Sbjct: 156 ESILR 160
>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 55.6 bits (128), Expect = 6e-09
Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 2/124 (1%)
Frame = +3
Query: 126 SEDQLAEFQEAFQLFDSRGDGKIHVAQIGDALRALGQNPTESDVKKCTLHLKPDER--IS 299
+E+Q + EAF+LFDS D I ++ A+RALG N +S+V K + +
Sbjct: 32 TEEQRQDINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKGYLQ 91
Query: 300 FEVFLPIYQAISKARSGDTANDFIEGLRHFDKDGNGFISSAELRHLLSTLGEKLSDDEVE 479
E F+ + K D + FD D G IS LR + L E + D E+E
Sbjct: 92 MEDFVRV--MTEKIVERDPLEEIKRAFELFDDDETGKISLRNLRRVAKELNENIDDQELE 149
Query: 480 QLLQ 491
+++
Sbjct: 150 AMIE 153
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 29.5 bits (63), Expect = 0.44
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = -1
Query: 225 LLTHLRSERHVSFHLHEN--RRAGRLLEILPIDPLNIQPYYESTNEIEGNEIGIFKGCDL 52
+ TH+ SE L+E R ++ +LP+ P +++P G + K D+
Sbjct: 216 IFTHISSEDLAHLGLNEQYARPDWMIITVLPVPPPSVRPSISVDGTSRGEDDLTHKLSDI 275
Query: 51 SKSNKNI 31
K+N N+
Sbjct: 276 IKANANV 282
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 29.1 bits (62), Expect = 0.59
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = -2
Query: 479 LYLIITELLSESREQVSQFRRRDEPIAIFVKMAQTLNKVISSVATACFRYGLVNWQK 309
L+L+ L++ +Q + R + IAIF K + +K I SVA R+ L QK
Sbjct: 1377 LHLLFASLVAHKFDQPQHAQTRTKIIAIFFKDLYSPHKEIYSVAIDALRHVLSQNQK 1433
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 27.5 bits (58), Expect = 1.8
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Frame = +3
Query: 303 EVFLPIYQAISKARSGDTANDFI--EGLRHFDKDGNGFISS-AELRHLLSTLGEK-LSDD 470
++F+ + I+K +G + I + RH DK GN F ++ EL +L +G+K L++
Sbjct: 643 DIFMSVTD-ITKIENGTKIYEEILQDCCRHIDKSGNEFTTAYLELLEVLLKVGQKYLAES 701
Query: 471 EVEQLL 488
+E +L
Sbjct: 702 LLEHIL 707
>SPAC1687.14c |||EF hand family protein, unknown
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 76
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +3
Query: 144 EFQEAFQLFDSRGDGKIHVAQIGDALRALGQNPTESDVKKCTLHLKPDERISFEVFLPIY 323
E +EAF LFD G I + + LG+N T+ ++ + ++S E F ++
Sbjct: 13 EAEEAFDLFDVTHKGYIDFEDLRRSCAQLGENLTKEQLQLMLDLAGTNGKVSREEFAELW 72
Query: 324 QAIS 335
IS
Sbjct: 73 IHIS 76
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 387 FDKDGNGFISSAELRHLLSTLGEKLSDDEVEQLL 488
FD G+I +LR + LGE L+ ++++ +L
Sbjct: 21 FDVTHKGYIDFEDLRRSCAQLGENLTKEQLQLML 54
>SPAC644.12 |cdc5||cell division control protein
Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 757
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 390 DKDGNGFISSAELRHLLSTLGEKLSDDEVEQLLQGTRRLS 509
D+D +S A R L +T G+K + E+ L+ TRRLS
Sbjct: 156 DEDEKEMLSEARAR-LANTQGKKAKRKDREKQLELTRRLS 194
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 11 DIIK-KKPIFLLLFDKSQPLNIPI 79
D+ K +KP+F L F K LN+PI
Sbjct: 327 DLTKFRKPMFFLAFGKYWQLNLPI 350
>SPAC3A11.05c |kms1||meiotic spindle pole body protein
Kms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 25.4 bits (53), Expect = 7.2
Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 10/137 (7%)
Frame = +3
Query: 144 EFQEAFQLFDSRGDGKIHVAQ----IGD--ALRALGQNPTESDV-KKCTLHL---KPDER 293
+F F +D + +GK+H++ I D L P S+ K+CTL D
Sbjct: 6 DFDLIFDSYDFKHEGKVHLSNFLPIINDLQLLHPASAPPLLSEFQKQCTLEFVRQNADLS 65
Query: 294 ISFEVFLPIYQAISKARSGDTANDFIEGLRHFDKDGNGFISSAELRHLLSTLGEKLSDDE 473
I+ + F +Y+ +++ AN + N A H +++ K S +
Sbjct: 66 ITKDNFRDVYKKLTENEDDSFANQAEKPSMEQQNSKNSIKEDAN-EHSVNSAHSKSSSNA 124
Query: 474 VEQLLQGTRRLSGKYQL 524
+ L ++ +S + L
Sbjct: 125 SPESLNPSQMMSKRLSL 141
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.0 bits (52), Expect = 9.5
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 404 WVHLFCGTATPALY 445
WVHL C + TP +Y
Sbjct: 927 WVHLICASWTPDVY 940
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,665,892
Number of Sequences: 5004
Number of extensions: 53518
Number of successful extensions: 195
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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