Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_B07
         (385 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    27   1.0  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    27   1.3  
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|...    26   2.3  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    26   2.3  
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    26   2.3  
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    25   3.1  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   4.1  
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    25   4.1  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    24   7.1  
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei...    24   7.1  
SPAC1805.07c |dad2|hos2|DASH complex subunit Dad2|Schizosaccharo...    24   9.4  

>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 13/56 (23%), Positives = 25/56 (44%)
 Frame = +2

Query: 41  GSYVNDHTLKKFKFSHKRDTNSTVKPFEANKSIVHHQNAVQRVSQSTSDFQASARP 208
           GS++N+H L      HK  ++    P     S +H   + Q +  S  + + + +P
Sbjct: 151 GSFINNHIL------HKNTSSHPSSPVNGKSSDIHKSQSYQHLKNSPPNSRTARKP 200


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +2

Query: 104 STVKPFEANKSIVHHQNAVQRVSQSTSDFQASARPQ*TIR*NSI 235
           S + PF  +KS  HH ++  +V +STS+ + S  P  T+  N +
Sbjct: 534 SPISPFSKSKSHNHHPSS--QVEKSTSNSKGSMLPLDTLYNNKL 575


>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 381

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 209 AVWLRPENRMLIVKPVVLHFDGG 141
           +VWL   N M    P++LH  GG
Sbjct: 105 SVWLAKVNGMTKSDPIILHLHGG 127


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +2

Query: 29  GSWRGSYVNDHTLKKFKFSHKRDTNSTVKPFE 124
           G +  S   DHTLK +K S      S  KPFE
Sbjct: 196 GQFLASQSFDHTLKVWKLSTFGVEKSIAKPFE 227


>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
 Frame = -3

Query: 284 SWSKVFRSS-KIRKTFNVWNFTE-LFIAVWLRPENRMLIV--KPVVLHFDGGQSIY*LRR 117
           SW  +  SS + RK   V   T  L+   W  P    +I+    V L   G +S+Y  R 
Sbjct: 397 SWIFIAVSSLRFRKALRVQGKTHRLYFPNWTYPVGPYIIILLNGVFLFLQGYKSLYPFRL 456

Query: 116 ALRSSWYL 93
           +L  S+Y+
Sbjct: 457 SLFVSYYM 464


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 264 PKNFGPRPNMMNKNFRPRNDFNEVKNDYKYLKKKLELGVK 383
           P N     N++N N + R   NE    +K  +K+L+L ++
Sbjct: 31  PNNINIAKNLLNNNIQARCSTNEA--SWKLAQKELDLKIR 68


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 11/48 (22%), Positives = 21/48 (43%)
 Frame = +2

Query: 53  NDHTLKKFKFSHKRDTNSTVKPFEANKSIVHHQNAVQRVSQSTSDFQA 196
           NDH + +F+ ++ R     +KP   N    + Q  + R     + F +
Sbjct: 595 NDHVINRFRLANDRIHEIELKPLSFNAVNSYVQATLHRTDDGLARFSS 642


>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +2

Query: 56  DHTLKKFKFSHKRDTNSTVKPFEANKSIVHHQNAVQRVSQSTSDFQ 193
           D TLK     +KR+ N  + P ++N+S      A+++  QST++ +
Sbjct: 64  DVTLKNIAKKNKRERNDKLIPQQSNES-----EAIEKPVQSTTEVE 104


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 59  HTLKKFKFSHKRDTNSTVKPFEANKSIVHHQNAVQRV 169
           H LKK K    +DT    +   AN +   H+N+ +++
Sbjct: 54  HELKKLKSHFLKDTLKHKRNHHANSNNEKHENSDKKI 90


>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
           Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +3

Query: 72  NLNSLIREIPTRP*SPSKLINRLSTIKMQYNGFHNQHPIFR 194
           N+N+     P +   P+++ NR+S ++  +    NQH  F+
Sbjct: 227 NINNSSPIKPKKIFKPNEVKNRISRLQKTFADLENQHHSFQ 267


>SPAC1805.07c |dad2|hos2|DASH complex subunit
           Dad2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 94

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 119 FEANKSIVHHQNAVQRVSQSTSDFQASARPQ 211
           FE+ +    H  A+ R+  STS+  ASA  Q
Sbjct: 58  FESIQIASQHSGALVRIPPSTSNTNASATEQ 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,592,849
Number of Sequences: 5004
Number of extensions: 32276
Number of successful extensions: 97
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)