Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_B07
         (385 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z14092-8|CAA78471.1|  208|Caenorhabditis elegans Hypothetical pr...    27   4.5  
X13689-1|CAA31979.1|  208|Caenorhabditis elegans protein ( Caeno...    27   4.5  
Z49126-5|CAA88940.3| 1270|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AF003150-3|AAB54214.1|  208|Caenorhabditis elegans Collagen prot...    26   7.9  

>Z14092-8|CAA78471.1|  208|Caenorhabditis elegans Hypothetical
           protein R107.7 protein.
          Length = 208

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 147 IKMQYNGFHNQHPIFRPQPDRNEQFGKIPYIK 242
           I M Y G  + H  +     RN + GK PYIK
Sbjct: 87  IDMFYEGLRDLHTKYTTMIYRNYEDGKAPYIK 118


>X13689-1|CAA31979.1|  208|Caenorhabditis elegans protein (
           Caenorhabditis elegansgst-1 mRNA for glutathione
           S-transferase P  subunit. ).
          Length = 208

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 147 IKMQYNGFHNQHPIFRPQPDRNEQFGKIPYIK 242
           I M Y G  + H  +     RN + GK PYIK
Sbjct: 87  IDMFYEGLRDLHTKYTTMIYRNYEDGKAPYIK 118


>Z49126-5|CAA88940.3| 1270|Caenorhabditis elegans Hypothetical
           protein DH11.3 protein.
          Length = 1270

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 20/53 (37%), Positives = 26/53 (49%)
 Frame = +1

Query: 169 FTINIRFSGLSQTAMNNSVKFHTLKVFLILEDLKTLDQDLI**TKTSDLEMIL 327
           FTI +  S  S T +     F T K    L+ L++ D DLI   K SDL  I+
Sbjct: 24  FTIILPSSRFSATLLRKLHFFITYKQIHYLKRLESEDLDLINFAKKSDLIFII 76


>AF003150-3|AAB54214.1|  208|Caenorhabditis elegans Collagen protein
           55 protein.
          Length = 208

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 62  TLKKFKFSHKRDTNSTVKPFEANKSIVHHQNAVQRVSQSTSDFQASARP 208
           T+ +FKF+ ++  NS VKP +    I    N   R +Q   + Q+   P
Sbjct: 57  TMTEFKFNEQQAWNSMVKPIDVFGRIKRRANT--RQAQCNCESQSQGCP 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,694,767
Number of Sequences: 27780
Number of extensions: 179393
Number of successful extensions: 502
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)