Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_A24
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos... 229 2e-61
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces... 228 6e-61
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 29 0.77
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 27 3.1
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 25 9.5
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 9.5
SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 25 9.5
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ... 25 9.5
>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
L15b|Schizosaccharomyces pombe|chr 1|||Manual
Length = 201
Score = 229 bits (561), Expect = 2e-61
Identities = 111/198 (56%), Positives = 132/198 (66%)
Frame = +2
Query: 59 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 238
MGAY+Y++EL +KK SDV FL RVR W+YRQ+ +HRA RP+RPDKARRLGY+AKQ
Sbjct: 1 MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60
Query: 239 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 418
TYGKP GVN LK R+ + AEE +SYW
Sbjct: 61 IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYW 120
Query: 419 VAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGLGKGHRY 598
V QD++YK+FEVILVDPSHKAIRRDP+INWIVN VHKHRE RGLTS G+ SRG+GKGHRY
Sbjct: 121 VNQDATYKFFEVILVDPSHKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGKGHRY 180
Query: 599 SQTKGGSRRAAWLXRNTL 652
+ + + A WL NTL
Sbjct: 181 NNS---PQHATWLRHNTL 195
>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 201
Score = 228 bits (557), Expect = 6e-61
Identities = 110/198 (55%), Positives = 132/198 (66%)
Frame = +2
Query: 59 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 238
MGAY+Y++EL +KK SDV FL RVR W+YRQ+ +HRA RP+RPDKARRLGY+AKQ
Sbjct: 1 MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60
Query: 239 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 418
TYGKP GVN LK R+ + AEE +SYW
Sbjct: 61 IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYW 120
Query: 419 VAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGLGKGHRY 598
V QD++YK+FEVILVDPSHKAIRRDP+INWIVN VHKHRE RGLTS G+ SRG+GKGHR+
Sbjct: 121 VNQDATYKFFEVILVDPSHKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGKGHRF 180
Query: 599 SQTKGGSRRAAWLXRNTL 652
+ + + A WL NTL
Sbjct: 181 NNS---PQHATWLRHNTL 195
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 28.7 bits (61), Expect = 0.77
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 420 LHKILHTSISRLSSWTRHTRPFVAILRSTGS*MLYISI 533
L+KIL S ++ ++T H P V ++ S LYIS+
Sbjct: 47 LYKILQISAPKVGNFTIHDAPVVGLIDSILEYYLYISV 84
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 425 QDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHK 529
+ S KY E P H + PK WI++ +HK
Sbjct: 1182 KSESNKYQEQAYSTPLHHTLNVLPKNKWILSRMHK 1216
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +2
Query: 125 LRVRVWQYRQLTRMHRAPRPTRPD 196
L+ +W Y L R++ PR PD
Sbjct: 280 LKETMWDYLNLVRVYTRPRGLEPD 303
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 382 SLRWSPCVELLLGCTRFF 435
SL+ P V LL+G TRFF
Sbjct: 568 SLKVPPLVPLLIGTTRFF 585
>SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 273
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 358 GLKVARGLQLVDTMALGLAISGTLSNW 278
GL VA G Q DT+ LG+ I +S++
Sbjct: 93 GLTVALGPQFPDTLVLGMEIRMQVSDY 119
>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 325
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 548 LTSAGRSSRGLGKG-HRYSQTKGGSRRAAWLXRN 646
++SAG S G GKG + T +RRAA RN
Sbjct: 236 VSSAGYSGEGYGKGTYATDTTAEANRRAATGTRN 269
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,703,148
Number of Sequences: 5004
Number of extensions: 53484
Number of successful extensions: 134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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