Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_A14
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.12c |||tRNA 2'-phosphotransferase Tpt1 |Schizosaccharomy...    90   3e-19
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   2.4  
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    25   7.2  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.5  

>SPAC2C4.12c |||tRNA 2'-phosphotransferase Tpt1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 89.8 bits (213), Expect = 3e-19
 Identities = 52/125 (41%), Positives = 69/125 (55%), Gaps = 1/125 (0%)
 Frame = +3

Query: 270 VQLSKSLSWLLRHGAVKEGLQISAEGYIRVDELLQHKSLCKFSVADVERVVATNEKQRFK 449
           V  SK+LS +LRH A   GLQI  +GYI VD +L+        +  +  +V  N+K+RF 
Sbjct: 35  VHYSKALSKVLRHTAKANGLQIREDGYIEVDSILKLPQFRGMGMELLLSIVKGNDKKRFT 94

Query: 450 LRFHTETKALEIKANQGHSIQLSNIELKLITKPI-YKTVIHGTYLKFWPQIKLQGLSRMK 626
           +        L I+ANQGHSI+   + +  I        V+HGT  + WP I  QGLSRMK
Sbjct: 95  ME--EVEGVLYIRANQGHSIKAVQVPMARIDNASSIPKVVHGTKKELWPVISKQGLSRMK 152

Query: 627 RQHIH 641
           R HIH
Sbjct: 153 RNHIH 157


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 165  VKSWIPSVTYFWNLITACSIS 227
            + +W+P   YFW  +TA  IS
Sbjct: 1343 ITAWLPHYIYFWITLTALCIS 1363


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 212 SVFNIA*LFMSLN-LQVQKRRTAKQIFILASEARCCERRTA 331
           S FNI+ +   L+ L  + R+  + ++   SEA C ER+ A
Sbjct: 41  SAFNISSMHNELSGLSEKSRQRVEAVWAAFSEASCSERKLA 81


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 18/71 (25%), Positives = 35/71 (49%)
 Frame = +3

Query: 396 SVADVERVVATNEKQRFKLRFHTETKALEIKANQGHSIQLSNIELKLITKPIYKTVIHGT 575
           S A+  +    NE QR +L F  + +  + +    H++ +SN+   +  K I    +H +
Sbjct: 91  SSANDAQSAGKNENQRSRLVFKAKREEEKTEEKFCHAVYMSNLLRNVEQKWI--QFLHKS 148

Query: 576 YLKFWPQIKLQ 608
           ++K W  I +Q
Sbjct: 149 WMK-WLHISIQ 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,555,049
Number of Sequences: 5004
Number of extensions: 50395
Number of successful extensions: 133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)