Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_A14
         (653 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY211494-1|AAO62941.1|  253|Homo sapiens tRNA splicing 2' phosph...   122   1e-27
BC005133-1|AAH05133.1|  204|Homo sapiens tRNA phosphotransferase...    91   4e-18

>AY211494-1|AAO62941.1|  253|Homo sapiens tRNA splicing 2'
           phosphotransferase 1 protein.
          Length = 253

 Score =  122 bits (294), Expect = 1e-27
 Identities = 62/128 (48%), Positives = 84/128 (65%), Gaps = 2/128 (1%)
 Frame = +3

Query: 264 KDVQLSKSLSWLLRHGAVKEGLQISAEGYIRVDELLQHKSLCKFSVADVERVVATNEKQR 443
           +DVQLSK+LS+ LRHGA+K GL + A+G++ +  LLQ      FS  DV+RVV TN KQR
Sbjct: 27  RDVQLSKALSYALRHGALKLGLPMGADGFVPLGTLLQLPQFRGFSAEDVQRVVDTNRKQR 86

Query: 444 FKLRFHTETKALEIKANQGHSIQLSNIELKLITKP--IYKTVIHGTYLKFWPQIKLQGLS 617
           F L+    +  L I+ANQGHS+Q+  +EL  +  P  +   ++HGT+ K WP I L+GLS
Sbjct: 87  FALQLGDPSTGLLIRANQGHSLQVPKLELMPLETPQALPPMLVHGTFWKHWPSILLKGLS 146

Query: 618 RMKRQHIH 641
              R HIH
Sbjct: 147 CQGRTHIH 154


>BC005133-1|AAH05133.1|  204|Homo sapiens tRNA phosphotransferase 1
           protein.
          Length = 204

 Score = 90.6 bits (215), Expect = 4e-18
 Identities = 46/105 (43%), Positives = 64/105 (60%), Gaps = 2/105 (1%)
 Frame = +3

Query: 333 ISAEGYIRVDELLQHKSLCKFSVADVERVVATNEKQRFKLRFHTETKALEIKANQGHSIQ 512
           + A+G++ +  LLQ      FS  DV+RVV TN KQRF L+    +  L I+ANQGHS+Q
Sbjct: 1   MGADGFVPLGTLLQLPQFRGFSAEDVQRVVDTNRKQRFALQLGDPSTGLLIRANQGHSLQ 60

Query: 513 LSNIELKLITKP--IYKTVIHGTYLKFWPQIKLQGLSRMKRQHIH 641
           +  +EL  +  P  +   ++HGT+ K WP I L+GLS   R HIH
Sbjct: 61  VPKLELMPLETPQALPPMLVHGTFWKHWPSILLKGLSCQGRTHIH 105


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,523,182
Number of Sequences: 237096
Number of extensions: 1534800
Number of successful extensions: 6882
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6880
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)