Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_A14
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023856-8|CAA19565.2|  326|Caenorhabditis elegans Hypothetical ...    33   0.18 
Z81524-4|CAB04250.1|  528|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AL023856-7|CAA19563.2|  326|Caenorhabditis elegans Hypothetical ...    30   1.6  
U39998-5|AAK71421.2|  408|Caenorhabditis elegans Gustatory recep...    29   3.8  
AC024780-3|AAF60571.2|  300|Caenorhabditis elegans Serpentine re...    28   6.7  

>AL023856-8|CAA19565.2|  326|Caenorhabditis elegans Hypothetical
           protein Y94A7B.3 protein.
          Length = 326

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
 Frame = -2

Query: 544 LVINFNS-ILDSCILCP*FALISNAFVSV*NLSLNRCFSFVATTRSTSATLNLHSDLCCN 368
           L I+F S I+        F +    FV +  L++ +  S + ++ S S TL +H      
Sbjct: 183 LAIDFYSLIIRQSFFTALFLIELIVFVVLIRLNMKKALSGIRSSVS-SKTLKMHKTFMTT 241

Query: 367 SSSTLM*PSALICSPSFTAPCLRSQDKDLLSCTSFLHL*IKTHKQLSDI 221
            +  +  P   IC PSF +  +   + D     + +++ + TH  LS +
Sbjct: 242 LNIQVAVPIVFICIPSFASIAIPLINADNQGTNNLIYITLSTHGALSTL 290


>Z81524-4|CAB04250.1|  528|Caenorhabditis elegans Hypothetical
           protein F32H5.4 protein.
          Length = 528

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +2

Query: 8   TIDYTLNIFETASFVNCFLISFWHIHLFSKINVQVCFLRLQXIHYYQ 148
           ++ + LNIF   + +    +   HIHL SK+ + +C   +   +Y++
Sbjct: 362 SLRWVLNIFFGLADLKFAKLGRKHIHLISKLTITICVFSIFVTYYFE 408


>AL023856-7|CAA19563.2|  326|Caenorhabditis elegans Hypothetical
           protein Y94A7B.1 protein.
          Length = 326

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 21/105 (20%), Positives = 43/105 (40%)
 Frame = -2

Query: 535 NFNSILDSCILCP*FALISNAFVSV*NLSLNRCFSFVATTRSTSATLNLHSDLCCNSSST 356
           NF  I    +    F      F  +  L++ +  S + ++ S   T  +H +   + +  
Sbjct: 188 NFRMIYRQLLFTALFLSELIVFTVLIRLNMQKAISEIRSSASCK-TFKIHRNFMKSLNMQ 246

Query: 355 LM*PSALICSPSFTAPCLRSQDKDLLSCTSFLHL*IKTHKQLSDI 221
           +  P  +IC PSF    +     +     +F+++ + TH  LS +
Sbjct: 247 IAVPIVVICIPSFFGLAVPFLQGNTQGAINFIYIIVSTHGALSTL 291


>U39998-5|AAK71421.2|  408|Caenorhabditis elegans Gustatory receptor
           family protein 5 protein.
          Length = 408

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 327 VLLSQHRASEAKIKICLAVRLFCTC 253
           ++L+QH +S     IC+   LFCTC
Sbjct: 287 MMLNQHLSSFTDFLICMPFILFCTC 311


>AC024780-3|AAF60571.2|  300|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 50 protein.
          Length = 300

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +2

Query: 11  IDYTLNIFETASFVN--CFLISFWHIHLFSKINVQVCFLRLQXIHYYQTKHFFCKKLDTI 184
           +++ L I+ET   +   C+L+    +H+ S  ++ +CF RL     ++  + F  +   +
Sbjct: 66  LEFALAIYETYDKIIDICYLLQNVFLHIQSLSSICICFHRLSTA-LFENSNKFWNRYYLL 124

Query: 185 SYIFL 199
            Y FL
Sbjct: 125 IYAFL 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,972,984
Number of Sequences: 27780
Number of extensions: 279382
Number of successful extensions: 749
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)