Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_P17
(621 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 83 2e-17
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 83 2e-17
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 56 4e-09
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 56 4e-09
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 56 4e-09
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 36 0.006
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub... 29 0.72
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 28 0.95
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 28 0.95
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 27 1.7
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 27 2.2
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc... 27 2.9
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo... 25 8.8
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 83.4 bits (197), Expect = 2e-17
Identities = 41/88 (46%), Positives = 51/88 (57%)
Frame = +3
Query: 243 IQKESTLHLVXXXXXXXXXXXXXNYSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLRRE 422
IQKESTLHLV Y+TP LAVL++YKV+++G + RLRRE
Sbjct: 61 IQKESTLHLVLRLRGGGKKRKKKTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRRE 120
Query: 423 CTGEQCGAGVFMAVMEDRHYCGKCHSTM 506
C CGA FMA +DR YCG+CH T+
Sbjct: 121 C--PNCGASTFMANHKDRLYCGRCHLTL 146
Score = 56.0 bits (129), Expect = 4e-09
Identities = 29/49 (59%), Positives = 35/49 (71%)
Frame = +2
Query: 95 SVDAAQTTTRSNCETLKFNDKRGNPLPTQQRLIFAGKQLEDGRTLSDYN 241
+++ + T N ++ K DK G P P QQRLIFAGKQLEDGRTLSDYN
Sbjct: 14 TLEVESSDTIDNVKS-KIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYN 60
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 83.4 bits (197), Expect = 2e-17
Identities = 41/88 (46%), Positives = 51/88 (57%)
Frame = +3
Query: 243 IQKESTLHLVXXXXXXXXXXXXXNYSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLRRE 422
IQKESTLHLV Y+TP LAVL++YKV+++G + RLRRE
Sbjct: 61 IQKESTLHLVLRLRGGGKKRKKKTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRRE 120
Query: 423 CTGEQCGAGVFMAVMEDRHYCGKCHSTM 506
C CGA FMA +DR YCG+CH T+
Sbjct: 121 C--PNCGASTFMANHKDRLYCGRCHLTL 146
Score = 56.0 bits (129), Expect = 4e-09
Identities = 29/49 (59%), Positives = 35/49 (71%)
Frame = +2
Query: 95 SVDAAQTTTRSNCETLKFNDKRGNPLPTQQRLIFAGKQLEDGRTLSDYN 241
+++ + T N ++ K DK G P P QQRLIFAGKQLEDGRTLSDYN
Sbjct: 14 TLEVESSDTIDNVKS-KIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYN 60
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 56.0 bits (129), Expect = 4e-09
Identities = 29/49 (59%), Positives = 35/49 (71%)
Frame = +2
Query: 95 SVDAAQTTTRSNCETLKFNDKRGNPLPTQQRLIFAGKQLEDGRTLSDYN 241
+++ + T N ++ K DK G P P QQRLIFAGKQLEDGRTLSDYN
Sbjct: 14 TLEVESSDTIDNVKS-KIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYN 60
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 56.0 bits (129), Expect = 4e-09
Identities = 29/49 (59%), Positives = 35/49 (71%)
Frame = +2
Query: 95 SVDAAQTTTRSNCETLKFNDKRGNPLPTQQRLIFAGKQLEDGRTLSDYN 241
+++ + T N ++ K DK G P P QQRLIFAGKQLEDGRTLSDYN
Sbjct: 14 TLEVESSDTIDNVKS-KIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYN 60
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 56.0 bits (129), Expect = 4e-09
Identities = 29/49 (59%), Positives = 35/49 (71%)
Frame = +2
Query: 95 SVDAAQTTTRSNCETLKFNDKRGNPLPTQQRLIFAGKQLEDGRTLSDYN 241
+++ + T N ++ K DK G P P QQRLIFAGKQLEDGRTLSDYN
Sbjct: 14 TLEVESSDTIDNVKS-KIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYN 60
Score = 56.0 bits (129), Expect = 4e-09
Identities = 29/49 (59%), Positives = 35/49 (71%)
Frame = +2
Query: 95 SVDAAQTTTRSNCETLKFNDKRGNPLPTQQRLIFAGKQLEDGRTLSDYN 241
+++ + T N ++ K DK G P P QQRLIFAGKQLEDGRTLSDYN
Sbjct: 90 TLEVESSDTIDNVKS-KIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYN 136
Score = 56.0 bits (129), Expect = 4e-09
Identities = 29/49 (59%), Positives = 35/49 (71%)
Frame = +2
Query: 95 SVDAAQTTTRSNCETLKFNDKRGNPLPTQQRLIFAGKQLEDGRTLSDYN 241
+++ + T N ++ K DK G P P QQRLIFAGKQLEDGRTLSDYN
Sbjct: 166 TLEVESSDTIDNVKS-KIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYN 212
Score = 56.0 bits (129), Expect = 4e-09
Identities = 29/49 (59%), Positives = 35/49 (71%)
Frame = +2
Query: 95 SVDAAQTTTRSNCETLKFNDKRGNPLPTQQRLIFAGKQLEDGRTLSDYN 241
+++ + T N ++ K DK G P P QQRLIFAGKQLEDGRTLSDYN
Sbjct: 242 TLEVESSDTIDNVKS-KIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYN 288
Score = 56.0 bits (129), Expect = 4e-09
Identities = 29/49 (59%), Positives = 35/49 (71%)
Frame = +2
Query: 95 SVDAAQTTTRSNCETLKFNDKRGNPLPTQQRLIFAGKQLEDGRTLSDYN 241
+++ + T N ++ K DK G P P QQRLIFAGKQLEDGRTLSDYN
Sbjct: 318 TLEVESSDTIDNVKS-KIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYN 364
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 35.5 bits (78), Expect = 0.006
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +2
Query: 143 KFNDKRGNPLPTQQRLIFAGKQLEDGRTLSDYNYPEG 253
+ +K G P P+QQRLI+AGKQ+ D + Y+ G
Sbjct: 29 RVEEKEGIP-PSQQRLIYAGKQMADDKNAESYHLEGG 64
>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 462
Score = 28.7 bits (61), Expect = 0.72
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +2
Query: 29 GRVNDANFSVNDPSRARPLTPCSVDAAQTTTRSNCETLKFNDKRGNPLPTQQRL 190
G+ D F + P + R L V + ++N E ND RGN L TQ+ +
Sbjct: 49 GKHFDETFEIYQPKKIRVLKTREVQYIEEEKKTNQE---LNDCRGNQLMTQEEI 99
>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 28.3 bits (60), Expect = 0.95
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 111 RLPLAATVKR*NSTTNEGIPSQLNRG*SLLESSWKM 218
RLPL A NS +PS +N G E SW++
Sbjct: 322 RLPLFAEKSETNSNGEASLPSDVNHGVKEDEGSWQL 357
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 28.3 bits (60), Expect = 0.95
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 584 NPSYTAVASVPYRLEGTYLFVVVFEDHRAMTLPAV 480
NP+YT Y L TYL F++HR + AV
Sbjct: 144 NPAYTNSHQNSYSLNETYLSYDFFDNHRGASSSAV 178
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 179 QQRLIFAGKQLEDGRTLSDYNYPEG 253
+QRLI+AG+ L+D +L Y +G
Sbjct: 43 RQRLIYAGRVLKDEESLKTYKIQDG 67
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 27.1 bits (57), Expect = 2.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 160 RESPPNSTEVDLCWKAAGRW 219
R P+ T VDL W+AAG++
Sbjct: 1170 RAIDPSGTNVDLLWRAAGKF 1189
>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 26.6 bits (56), Expect = 2.9
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +3
Query: 366 VLRFY-KVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVFKDDD 524
V+R Y ++ +N + R C E F V++D H KC + ++ D
Sbjct: 224 VIRCYLRLSDNPRAREALRHCLPEPLRDATFAQVLKDDHNTKKCLAQLLINLSD 277
>SPBC11G11.02c |end3||actin cortical patch component End3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 375
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 192 SLLESSWKMDVPSRTTTIQKESTL 263
S ++ +WK+ P T TIQK+ L
Sbjct: 174 SQIQKAWKLVNPQGTETIQKDQCL 197
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,258,157
Number of Sequences: 5004
Number of extensions: 40724
Number of successful extensions: 109
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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