Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_P17
(621 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L16530-1|AAA28161.1| 163|Caenorhabditis elegans ubiquitin-like:... 86 2e-17
AC006651-4|AAF39865.1| 163|Caenorhabditis elegans Ubiquitin-lik... 86 2e-17
Z82083-1|CAB04967.1| 128|Caenorhabditis elegans Hypothetical pr... 56 3e-08
U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin prote... 56 3e-08
U23172-1|AAC46525.1| 838|Caenorhabditis elegans Ubiquitin prote... 56 3e-08
M23433-1|AAA28154.1| 838|Caenorhabditis elegans polyubiquitin p... 56 3e-08
L31492-1|AAC37252.1| 128|Caenorhabditis elegans ubiquitin/ribos... 56 3e-08
Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical pr... 41 6e-04
AF040645-8|AAB94982.1| 292|Caenorhabditis elegans Hypothetical ... 37 0.013
AC024877-4|ABQ13047.1| 697|Caenorhabditis elegans Phosphodieste... 28 6.2
AC024877-3|AAF60898.1| 760|Caenorhabditis elegans Phosphodieste... 28 6.2
U58758-15|AAB93424.1| 259|Caenorhabditis elegans Nanos related ... 27 8.2
>L16530-1|AAA28161.1| 163|Caenorhabditis elegans
ubiquitin-like:ribosomal proteinfusion protein protein.
Length = 163
Score = 85.8 bits (203), Expect = 2e-17
Identities = 39/89 (43%), Positives = 51/89 (57%)
Frame = +3
Query: 243 IQKESTLHLVXXXXXXXXXXXXXNYSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLRRE 422
I E+T+++ Y+TP LAVL++YK+DENGKI RLR+E
Sbjct: 55 IDSEATIYVNLELLGGAKKRKKKVYTTPKKNKRKPKKVKLAVLKYYKIDENGKITRLRKE 114
Query: 423 CTGEQCGAGVFMAVMEDRHYCGKCHSTMV 509
C CG GVFMA +RHYCG+CH T+V
Sbjct: 115 CQQPSCGGGVFMAQHANRHYCGRCHDTLV 143
>AC006651-4|AAF39865.1| 163|Caenorhabditis elegans Ubiquitin-like
family protein 1,isoform a protein.
Length = 163
Score = 85.8 bits (203), Expect = 2e-17
Identities = 39/89 (43%), Positives = 51/89 (57%)
Frame = +3
Query: 243 IQKESTLHLVXXXXXXXXXXXXXNYSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLRRE 422
I E+T+++ Y+TP LAVL++YK+DENGKI RLR+E
Sbjct: 55 IDSEATIYVNLELLGGAKKRKKKVYTTPKKNKRKPKKVKLAVLKYYKIDENGKITRLRKE 114
Query: 423 CTGEQCGAGVFMAVMEDRHYCGKCHSTMV 509
C CG GVFMA +RHYCG+CH T+V
Sbjct: 115 CQQPSCGGGVFMAQHANRHYCGRCHDTLV 143
>Z82083-1|CAB04967.1| 128|Caenorhabditis elegans Hypothetical
protein ZK1010.1 protein.
Length = 128
Score = 55.6 bits (128), Expect = 3e-08
Identities = 27/33 (81%), Positives = 27/33 (81%)
Frame = +2
Query: 143 KFNDKRGNPLPTQQRLIFAGKQLEDGRTLSDYN 241
K DK G P P QQRLIFAGKQLEDGRTLSDYN
Sbjct: 29 KIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYN 60
>U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin protein
1, isoform c protein.
Length = 538
Score = 55.6 bits (128), Expect = 3e-08
Identities = 27/33 (81%), Positives = 27/33 (81%)
Frame = +2
Query: 143 KFNDKRGNPLPTQQRLIFAGKQLEDGRTLSDYN 241
K DK G P P QQRLIFAGKQLEDGRTLSDYN
Sbjct: 29 KIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYN 60
Score = 55.6 bits (128), Expect = 3e-08
Identities = 27/33 (81%), Positives = 27/33 (81%)
Frame = +2
Query: 143 KFNDKRGNPLPTQQRLIFAGKQLEDGRTLSDYN 241
K DK G P P QQRLIFAGKQLEDGRTLSDYN
Sbjct: 105 KIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYN 136
Score = 55.6 bits (128), Expect = 3e-08
Identities = 27/33 (81%), Positives = 27/33 (81%)
Frame = +2
Query: 143 KFNDKRGNPLPTQQRLIFAGKQLEDGRTLSDYN 241
K DK G P P QQRLIFAGKQLEDGRTLSDYN
Sbjct: 181 KIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYN 212
Score = 55.6 bits (128), Expect = 3e-08
Identities = 27/33 (81%), Positives = 27/33 (81%)
Frame = +2
Query: 143 KFNDKRGNPLPTQQRLIFAGKQLEDGRTLSDYN 241
K DK G P P QQRLIFAGKQLEDGRTLSDYN
Sbjct: 257 KIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYN 288
Score = 55.6 bits (128), Expect = 3e-08
Identities = 27/33 (81%), Positives = 27/33 (81%)
Frame = +2
Query: 143 KFNDKRGNPLPTQQRLIFAGKQLEDGRTLSDYN 241
K DK G P P QQRLIFAGKQLEDGRTLSDYN
Sbjct: 333 KIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYN 364
Score = 55.6 bits (128), Expect = 3e-08
Identities = 27/33 (81%), Positives = 27/33 (81%)
Frame = +2
Query: 143 KFNDKRGNPLPTQQRLIFAGKQLEDGRTLSDYN 241
K DK G P P QQRLIFAGKQLEDGRTLSDYN
Sbjct: 409 KIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYN 440
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/20 (70%), Positives = 14/20 (70%)
Frame = +2
Query: 143 KFNDKRGNPLPTQQRLIFAG 202
K DK G P P QQRLIFAG
Sbjct: 485 KIQDKEGIP-PDQQRLIFAG 503
>U23172-1|AAC46525.1| 838|Caenorhabditis elegans Ubiquitin protein
1, isoform a protein.
Length = 838
Score = 55.6 bits (128), Expect = 3e-08
Identities = 27/33 (81%), Positives = 27/33 (81%)
Frame = +2
Query: 143 KFNDKRGNPLPTQQRLIFAGKQLEDGRTLSDYN 241
K DK G P P QQRLIFAGKQLEDGRTLSDYN
Sbjct: 29 KIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYN 60
Score = 55.6 bits (128), Expect = 3e-08
Identities = 27/33 (81%), Positives = 27/33 (81%)
Frame = +2
Query: 143 KFNDKRGNPLPTQQRLIFAGKQLEDGRTLSDYN 241
K DK G P P QQRLIFAGKQLEDGRTLSDYN
Sbjct: 105 KIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYN 136
Score = 55.6 bits (128), Expect = 3e-08
Identities = 27/33 (81%), Positives = 27/33 (81%)
Frame = +2
Query: 143 KFNDKRGNPLPTQQRLIFAGKQLEDGRTLSDYN 241
K DK G P P QQRLIFAGKQLEDGRTLSDYN
Sbjct: 181 KIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYN 212
Score = 55.6 bits (128), Expect = 3e-08
Identities = 27/33 (81%), Positives = 27/33 (81%)
Frame = +2
Query: 143 KFNDKRGNPLPTQQRLIFAGKQLEDGRTLSDYN 241
K DK G P P QQRLIFAGKQLEDGRTLSDYN
Sbjct: 257 KIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYN 288
Score = 55.6 bits (128), Expect = 3e-08
Identities = 27/33 (81%), Positives = 27/33 (81%)
Frame = +2
Query: 143 KFNDKRGNPLPTQQRLIFAGKQLEDGRTLSDYN 241
K DK G P P QQRLIFAGKQLEDGRTLSDYN
Sbjct: 333 KIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYN 364
Score = 55.6 bits (128), Expect = 3e-08
Identities = 27/33 (81%), Positives = 27/33 (81%)
Frame = +2
Query: 143 KFNDKRGNPLPTQQRLIFAGKQLEDGRTLSDYN 241
K DK G P P QQRLIFAGKQLEDGRTLSDYN
Sbjct: 409 KIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYN 440
Score = 55.6 bits (128), Expect = 3e-08
Identities = 27/33 (81%), Positives = 27/33 (81%)
Frame = +2
Query: 143 KFNDKRGNPLPTQQRLIFAGKQLEDGRTLSDYN 241
K DK G P P QQRLIFAGKQLEDGRTLSDYN
Sbjct: 485 KIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYN 516
Score = 55.6 bits (128), Expect = 3e-08
Identities = 27/33 (81%), Positives = 27/33 (81%)
Frame = +2
Query: 143 KFNDKRGNPLPTQQRLIFAGKQLEDGRTLSDYN 241
K DK G P P QQRLIFAGKQLEDGRTLSDYN
Sbjct: 561 KIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYN 592
Score = 55.6 bits (128), Expect = 3e-08
Identities = 27/33 (81%), Positives = 27/33 (81%)
Frame = +2
Query: 143 KFNDKRGNPLPTQQRLIFAGKQLEDGRTLSDYN 241
K DK G P P QQRLIFAGKQLEDGRTLSDYN
Sbjct: 637 KIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYN 668
Score = 55.6 bits (128), Expect = 3e-08
Identities = 27/33 (81%), Positives = 27/33 (81%)
Frame = +2
Query: 143 KFNDKRGNPLPTQQRLIFAGKQLEDGRTLSDYN 241
K DK G P P QQRLIFAGKQLEDGRTLSDYN
Sbjct: 713 KIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYN 744
Score = 55.6 bits (128), Expect = 3e-08
Identities = 27/33 (81%), Positives = 27/33 (81%)
Frame = +2
Query: 143 KFNDKRGNPLPTQQRLIFAGKQLEDGRTLSDYN 241
K DK G P P QQRLIFAGKQLEDGRTLSDYN
Sbjct: 789 KIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYN 820
>M23433-1|AAA28154.1| 838|Caenorhabditis elegans polyubiquitin
protein.
Length = 838
Score = 55.6 bits (128), Expect = 3e-08
Identities = 27/33 (81%), Positives = 27/33 (81%)
Frame = +2
Query: 143 KFNDKRGNPLPTQQRLIFAGKQLEDGRTLSDYN 241
K DK G P P QQRLIFAGKQLEDGRTLSDYN
Sbjct: 29 KIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYN 60
Score = 55.6 bits (128), Expect = 3e-08
Identities = 27/33 (81%), Positives = 27/33 (81%)
Frame = +2
Query: 143 KFNDKRGNPLPTQQRLIFAGKQLEDGRTLSDYN 241
K DK G P P QQRLIFAGKQLEDGRTLSDYN
Sbjct: 105 KIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYN 136
Score = 55.6 bits (128), Expect = 3e-08
Identities = 27/33 (81%), Positives = 27/33 (81%)
Frame = +2
Query: 143 KFNDKRGNPLPTQQRLIFAGKQLEDGRTLSDYN 241
K DK G P P QQRLIFAGKQLEDGRTLSDYN
Sbjct: 181 KIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYN 212
Score = 55.6 bits (128), Expect = 3e-08
Identities = 27/33 (81%), Positives = 27/33 (81%)
Frame = +2
Query: 143 KFNDKRGNPLPTQQRLIFAGKQLEDGRTLSDYN 241
K DK G P P QQRLIFAGKQLEDGRTLSDYN
Sbjct: 257 KIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYN 288
Score = 55.6 bits (128), Expect = 3e-08
Identities = 27/33 (81%), Positives = 27/33 (81%)
Frame = +2
Query: 143 KFNDKRGNPLPTQQRLIFAGKQLEDGRTLSDYN 241
K DK G P P QQRLIFAGKQLEDGRTLSDYN
Sbjct: 333 KIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYN 364
Score = 55.6 bits (128), Expect = 3e-08
Identities = 27/33 (81%), Positives = 27/33 (81%)
Frame = +2
Query: 143 KFNDKRGNPLPTQQRLIFAGKQLEDGRTLSDYN 241
K DK G P P QQRLIFAGKQLEDGRTLSDYN
Sbjct: 409 KIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYN 440
Score = 55.6 bits (128), Expect = 3e-08
Identities = 27/33 (81%), Positives = 27/33 (81%)
Frame = +2
Query: 143 KFNDKRGNPLPTQQRLIFAGKQLEDGRTLSDYN 241
K DK G P P QQRLIFAGKQLEDGRTLSDYN
Sbjct: 485 KIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYN 516
Score = 55.6 bits (128), Expect = 3e-08
Identities = 27/33 (81%), Positives = 27/33 (81%)
Frame = +2
Query: 143 KFNDKRGNPLPTQQRLIFAGKQLEDGRTLSDYN 241
K DK G P P QQRLIFAGKQLEDGRTLSDYN
Sbjct: 561 KIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYN 592
Score = 55.6 bits (128), Expect = 3e-08
Identities = 27/33 (81%), Positives = 27/33 (81%)
Frame = +2
Query: 143 KFNDKRGNPLPTQQRLIFAGKQLEDGRTLSDYN 241
K DK G P P QQRLIFAGKQLEDGRTLSDYN
Sbjct: 637 KIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYN 668
Score = 55.6 bits (128), Expect = 3e-08
Identities = 27/33 (81%), Positives = 27/33 (81%)
Frame = +2
Query: 143 KFNDKRGNPLPTQQRLIFAGKQLEDGRTLSDYN 241
K DK G P P QQRLIFAGKQLEDGRTLSDYN
Sbjct: 713 KIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYN 744
Score = 55.6 bits (128), Expect = 3e-08
Identities = 27/33 (81%), Positives = 27/33 (81%)
Frame = +2
Query: 143 KFNDKRGNPLPTQQRLIFAGKQLEDGRTLSDYN 241
K DK G P P QQRLIFAGKQLEDGRTLSDYN
Sbjct: 789 KIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYN 820
>L31492-1|AAC37252.1| 128|Caenorhabditis elegans
ubiquitin/ribosomal fusion protein protein.
Length = 128
Score = 55.6 bits (128), Expect = 3e-08
Identities = 27/33 (81%), Positives = 27/33 (81%)
Frame = +2
Query: 143 KFNDKRGNPLPTQQRLIFAGKQLEDGRTLSDYN 241
K DK G P P QQRLIFAGKQLEDGRTLSDYN
Sbjct: 29 KIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYN 60
>Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical
protein F45H11.2 protein.
Length = 77
Score = 41.1 bits (92), Expect = 6e-04
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +2
Query: 143 KFNDKRGNPLPTQQRLIFAGKQLEDGRTLSDY 238
K +K G P P QQRLIFAGKQ+ D +T +DY
Sbjct: 29 KVEEKEGIP-PPQQRLIFAGKQMNDDKTAADY 59
>AF040645-8|AAB94982.1| 292|Caenorhabditis elegans Hypothetical
protein F52C6.4 protein.
Length = 292
Score = 36.7 bits (81), Expect = 0.013
Identities = 22/38 (57%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = +2
Query: 134 ETLKFN--DKRGNPLPTQQRLIFAGKQLEDGRTLSDYN 241
ETLKF +K G P P QQRLIF QLE+ R L YN
Sbjct: 184 ETLKFKVQNKHGVP-PDQQRLIFGRAQLENDRALFAYN 220
>AC024877-4|ABQ13047.1| 697|Caenorhabditis elegans
Phosphodiesterase protein 6, isoformb protein.
Length = 697
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +1
Query: 85 HPLQRRRRS--DYHSQQL*NAKIQRQTRESPPNSTEVDLCWK 204
HP ++R+RS D H ++ + +R+ N+ E D CWK
Sbjct: 404 HPARQRKRSVVDAHREKRGSHGERRRVSADVKNALENDNCWK 445
>AC024877-3|AAF60898.1| 760|Caenorhabditis elegans
Phosphodiesterase protein 6, isoforma protein.
Length = 760
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +1
Query: 85 HPLQRRRRS--DYHSQQL*NAKIQRQTRESPPNSTEVDLCWK 204
HP ++R+RS D H ++ + +R+ N+ E D CWK
Sbjct: 404 HPARQRKRSVVDAHREKRGSHGERRRVSADVKNALENDNCWK 445
>U58758-15|AAB93424.1| 259|Caenorhabditis elegans Nanos related
protein 2 protein.
Length = 259
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 38 NDANFSVNDPSRARPLTPCSVDAAQTTTRS 127
+D + S + S P+TPCS++ +T+T S
Sbjct: 46 SDPSLSDSFDSEWSPMTPCSIERPETSTSS 75
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,787,179
Number of Sequences: 27780
Number of extensions: 247056
Number of successful extensions: 704
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -