Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_P17
         (621 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.2  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.2  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.2  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.2  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.2  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.2  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   5.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   5.5  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   7.3  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   9.7  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 545 LEGTYLFVVVFEDHRAMTLPAVVTVLHHR 459
           L G+Y   ++F    ++ L  +V + HHR
Sbjct: 256 LLGSYFNCIMFMVASSVVLTVLVLIFHHR 284


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 545 LEGTYLFVVVFEDHRAMTLPAVVTVLHHR 459
           L G+Y   ++F    ++ L  +V + HHR
Sbjct: 256 LLGSYFNCIMFMVASSVVLTVLVLIFHHR 284


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 545 LEGTYLFVVVFEDHRAMTLPAVVTVLHHR 459
           L G+Y   ++F    ++ L  +V + HHR
Sbjct: 256 LLGSYFNCIMFMVASSVVLTVLVLIFHHR 284


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 545 LEGTYLFVVVFEDHRAMTLPAVVTVLHHR 459
           L G+Y   ++F    ++ L  +V + HHR
Sbjct: 256 LIGSYFNCIMFMVASSVVLTVLVLIFHHR 284


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 545 LEGTYLFVVVFEDHRAMTLPAVVTVLHHR 459
           L G+Y   ++F    ++ L  +V + HHR
Sbjct: 256 LIGSYFNCIMFMVASSVVLTVLVLIFHHR 284


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 545 LEGTYLFVVVFEDHRAMTLPAVVTVLHHR 459
           L G+Y   ++F    ++ L  +V + HHR
Sbjct: 256 LIGSYFNCIMFMVASSVVLTVLVLIFHHR 284


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 128 NCETLKFNDKRGNPLPT 178
           NC++ KF +   N LPT
Sbjct: 66  NCDSSKFEEDLMNKLPT 82


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 17  TRANGRVNDANFSVNDPSRARPL 85
           TRA GR++  N S   P R   L
Sbjct: 246 TRAEGRLSSDNMSKKSPVRKATL 268


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 505 WSSKTTTNK*VPSSL*GTLATAVYD 579
           WSSKT TN  V  S+   +    YD
Sbjct: 222 WSSKTETNATVLHSINKVIIHPKYD 246


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -3

Query: 178 SWEGIPSFVVEF*RFTVAASGSLSGVDAARGEWSCP*XVVYXKV 47
           S E + S +V+F    VA   +   VDAA+  W      +Y +V
Sbjct: 181 SQEYVRSKLVDFLNDLVAIGVAGFRVDAAKHMWPSDLRTIYSRV 224


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,335
Number of Sequences: 438
Number of extensions: 2769
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)