Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_P13
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    28   1.0  
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe...    27   3.1  
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    25   9.5  
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch...    25   9.5  
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c...    25   9.5  
SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po...    25   9.5  

>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
 Frame = +2

Query: 500 NWKHLPVG-----YHGRSSSIVISGTPIHRPYGQTLPVEGAAPHFGPCRLMDFELE 652
           NW HLP       Y  R S+  I     ++    +LP EG      P R+M F++E
Sbjct: 248 NWIHLPASKYQFRYQNRVSNCQIEAWINYKDL-ISLPAEGQWSKMAPLRIMSFDIE 302


>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 548

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 523 LSWTFQFYSDLWHTYPQALWTDLACRRCGAPL 618
           L  TF F+SDL+  +P   W   A R    PL
Sbjct: 229 LDCTFSFFSDLFSRFPVQSWYSEAIRANLQPL 260


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 267 SAINAFNFSSLNTFCLLFSSGPSNK 193
           S I   N +++NT C+ F  GPS+K
Sbjct: 331 SCIGPVN-AAMNTVCVYFHEGPSSK 354


>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 538

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 193 FIRWPATKKQAKCIQGREIKRVYGTDQTSLDRG 291
           F RW A   +   I+   I +VY  DQ ++ +G
Sbjct: 142 FARWLAMNPKVTSIKRFHIAKVYRRDQPAMTKG 174


>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 489

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +1

Query: 454 QRXHNVXGKGGRSVRELETSTGGLSWTFQFYSDLWHTYPQALWT 585
           +R   + G   ++V  + T +G L W    + DL  T P   WT
Sbjct: 303 RRTRGIIGLTIQAVVIMATLSGELGWIVSKHIDLHDTSPDLDWT 346


>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +2

Query: 134 QKHIGVAIGEWILXLNIISRLFDGPLLKSKQNVFKEEKLNAFMALTKPHW--IEAXETLQ 307
           QKH  + + EW+    I +   +G  +  K+   KEE L++     K +   I+  +TL+
Sbjct: 307 QKHFNLTVKEWVF---IANAAINGSWISGKR---KEELLSSVQKCVKEYTAEIQQPKTLE 360

Query: 308 KLLDVSS 328
             ++V +
Sbjct: 361 TAVEVQA 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,728,336
Number of Sequences: 5004
Number of extensions: 55523
Number of successful extensions: 136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)