Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_P13
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   2.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.5  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   6.0  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 416 LRXQQARAFVRPXASRKPFHV 354
           +R   ARAF+ P  +R   HV
Sbjct: 261 VRLSSARAFITPFENRSNLHV 281


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 193  FIRWPATKKQAKCIQGREIKRVYGTDQTSL 282
            FI+   +  Q++ IQ +++KRV    Q S+
Sbjct: 1048 FIKQSPSSNQSQQIQQQQLKRVVTNQQQSI 1077


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +3

Query: 423 QTSIRRCSTLPTXA*CSXERRPLCSRT 503
           QTSI   +  PT   CS  +RP    T
Sbjct: 866 QTSISHENNQPTMNKCSDRKRPASQAT 892


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 54  FHXILVRFRFSNSKIYRTVCLRL 122
           FH I++    + S +YR VC R+
Sbjct: 461 FHSIVLGSLLNPSHMYRAVCGRI 483


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,604
Number of Sequences: 438
Number of extensions: 4043
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)