Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_P12
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    27   2.4  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    25   7.2  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    25   9.5  

>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 377 LITFSCIETRDPEVGHPERHEIHVLXKYFNDHLRS 481
           L TFS ++     +  PERH   VL K+ N+HL++
Sbjct: 330 LETFSLLDNSISMLDSPERH---VLEKFLNNHLQN 361


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
 Frame = +2

Query: 290 YFAKPSF-FKAEDKVKNQVSPPKYLPXK*QLITFSCIETRDPEVGHPERHEIHVLXKYFN 466
           Y   PS+  + E+ +K  +S    +     L TF  +     E+ HP  H I  L    N
Sbjct: 169 YSLDPSYKSQLEEHIKTLLSDNSPIVVPAALFTFEVVCPEKLEIIHPYYHRICTLFPQMN 228

Query: 467 D 469
           D
Sbjct: 229 D 229


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +2

Query: 353 KYLPXK*QLITFSCIETRDPEVGHPERHEIHVLXKYFNDHLRSV 484
           +Y   K  LI F+ I   DPE GH  R       ++ +D ++ +
Sbjct: 813 RYRKFKKPLIDFNDIYCVDPETGHSYRSREECHYEFVDDVVKQI 856


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,390,907
Number of Sequences: 5004
Number of extensions: 45163
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)