Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_P10
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr 1||...    59   6e-10
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    28   1.2  
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    27   2.2  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    25   8.7  

>SPAC9E9.13 |wos2||p23 homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 186

 Score = 58.8 bits (136), Expect = 6e-10
 Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 8/110 (7%)
 Frame = +2

Query: 74  QLLWAQR--KED-----VFLTFSV-ETKDPTIKIXKDSVYFRGEGAPDNXLHEVTIALYD 229
           ++LWAQR  K+D     ++LT  + +  DP I +  + +    +    N  + V I  + 
Sbjct: 9   EVLWAQRSNKDDAEKNVIYLTVLIPDAVDPKINLTPEKLVIDSKSGA-NAHYAVQIDFFK 67

Query: 230 TVLPEKSVFVNKGRCVEMILRKEKTDGPFWPTLTKDKKKPHYLKIDFNKW 379
            +  EKS +   GR +  +L K++    FWP LTK+K + H+L+ DF++W
Sbjct: 68  DIDVEKSKYSVTGRYIFFVLYKKELQEEFWPRLTKEKLRLHWLRTDFDRW 117


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -3

Query: 306 SVFSFRNIISTHLPLFTKTLFSGRTVSYSAIVTSCSXLSGAPSPLKYTES 157
           S+F F  I    L L TK++FS + ++   ++  C   SG    + YTES
Sbjct: 140 SIF-FHAIACYALYLLTKSIFSNQKMTAYTVIFYCFSPSGIYMSVGYTES 188


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 171 KYTESFXILIVGSLVSTLNVRKTSSFRCAH 82
           +Y E    L V +++ST  V+   SF+CAH
Sbjct: 469 RYAELGRWLDVATILSTAEVQSQRSFQCAH 498


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -3

Query: 582 TLKSNITVLF*CHFIPDQVNSHHQSQFPSHQTKVFLPSAQDHQLHLKF 439
           TLK NI ++   H + D + S H S     Q  V +   Q  Q  L+F
Sbjct: 353 TLKDNICIIDEAHNLIDAICSMHSSSISFRQ--VCIAETQLQQYFLRF 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,384,399
Number of Sequences: 5004
Number of extensions: 46156
Number of successful extensions: 133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)