Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_P10
         (614 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13642-6|AAG00038.1|  175|Caenorhabditis elegans Hypothetical pr...    62   2e-10
U64600-1|AAK39203.1|  500|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF047652-3|AAM98045.1|   66|Caenorhabditis elegans Hypothetical ...    29   2.6  

>U13642-6|AAG00038.1|  175|Caenorhabditis elegans Hypothetical
           protein ZC395.10 protein.
          Length = 175

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
 Frame = +2

Query: 77  LLWAQRKEDVFLTFSV-ETKDPTIKIXKDSVYFRGEGAPDNXLHEVTIALYDTVLPEKSV 253
           +LWAQR+  V+LT  V E K   +K   + ++F+G    D   +E T+  +D + P    
Sbjct: 7   VLWAQRESLVYLTIEVDEAKIEELKGEGNKLHFQGSSKTDK--YEATLEFFDEIDPASVK 64

Query: 254 FVNKGRCVEMILRKEKTDGPFWPTLTKDKKKPHYLKIDFNKW 379
                  V  I  ++KT   +WP L ++K K H+LK+DF KW
Sbjct: 65  HTGSSTRVVEITVQKKTPA-WWPRLLQNKGKVHWLKVDFGKW 105


>U64600-1|AAK39203.1|  500|Caenorhabditis elegans Hypothetical
           protein C33D12.2 protein.
          Length = 500

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 161 SVYFRGEGAPDNXLHEVTIALYDTVLPEKSVFV 259
           +V+F G+ +  N  HE+TI     V+P K+V V
Sbjct: 16  TVFFSGKSSEKNVCHEITIKHNVVVVPNKNVRV 48


>AF047652-3|AAM98045.1|   66|Caenorhabditis elegans Hypothetical
           protein C34H4.5 protein.
          Length = 66

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 138 GSLVSTLNVRKTSSFRCAHNSWRW 67
           GS+++    R++S  RCA   WRW
Sbjct: 40  GSIITGRTRRRSSPVRCADTRWRW 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,369,582
Number of Sequences: 27780
Number of extensions: 263951
Number of successful extensions: 824
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)