Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_P08
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    27   2.3  
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc...    27   2.3  
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    27   3.1  
SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces pombe...    25   7.1  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   9.4  
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    25   9.4  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    25   9.4  

>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 197 DFTTYDDYKECSLSFYTHCVTTRYTEII 114
           D    D++ +  L FY  C T+++ EII
Sbjct: 475 DCQKIDEFMDAELKFYKECQTSQWEEII 502


>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 288

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 537 SQCFSNLVETQYYHXSKL*NRNCFSLIYCQLFD 439
           SQC  +LV+  YY    L NR+ F  ++ ++FD
Sbjct: 237 SQCIPHLVQKSYY----LQNRHVFPCVHWEVFD 265


>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 190 QHMTITKNVRYHSTHIVSRLDIRK**ADTEIR 95
           QH+ + K ++Y +      LD++K   DTEI+
Sbjct: 99  QHLLVQKIIKYKNHQYYEILDLKKTCTDTEIK 130


>SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +2

Query: 23  KFLQLCESENSTNQRMIRYYGPFMSYFCVGLL 118
           K+++  E+ N  N+R +  +GPF+    +G++
Sbjct: 209 KYVKGAEAWNGWNKRCLENFGPFVKLSLLGIV 240


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 468 SSSCSTIYLXDSTVSQPNL 524
           SSSCS +Y   +T+S P L
Sbjct: 8   SSSCSKLYAIKATISLPRL 26


>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +3

Query: 285 GEVSSNNIQHIXXREPDDGDIDPSQDPMAGTIFMERSKASIXNGMTRK 428
           GE +SN ++     +P +    PS   ++ T+F++R   +  NG  +K
Sbjct: 15  GEKNSNTLEKCIILDPSE----PSFQQLSKTLFLDRKGKNKLNGTIQK 58


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 281 WKIVFQLYYIFANGRWTPIAA 219
           WK +FQ   +F+   WT +AA
Sbjct: 261 WKTLFQFLLLFSAYAWTVLAA 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,477,768
Number of Sequences: 5004
Number of extensions: 47477
Number of successful extensions: 96
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)