Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_P08
         (648 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069580-1|AAL39725.1|  406|Drosophila melanogaster LD31675p pro...   140   1e-33
AE014134-2099|AAF53122.1|  406|Drosophila melanogaster CG14939-P...   140   1e-33
DQ162845-1|ABA42953.1| 1715|Drosophila melanogaster TRF2 protein.      28   9.5  
BT003751-1|AAO41415.1|  286|Drosophila melanogaster RH56454p pro...    28   9.5  
AY060677-1|AAL28225.1|  626|Drosophila melanogaster GH11117p pro...    28   9.5  
AE014297-4807|AAF57196.2|  626|Drosophila melanogaster CG1937-PA...    28   9.5  

>AY069580-1|AAL39725.1|  406|Drosophila melanogaster LD31675p
           protein.
          Length = 406

 Score =  140 bits (340), Expect = 1e-33
 Identities = 80/144 (55%), Positives = 91/144 (63%), Gaps = 26/144 (18%)
 Frame = +3

Query: 294 SSNNIQHIXXREPDDGDIDPSQDPMAGTIFMERSKASIXNGMTRKRSQHQIADNK----- 458
           +  N+QHI  RE  +G+ DPS DP A T+F+ERSK     GMTRKRSQ QIA        
Sbjct: 79  NQQNLQHISEREALEGEEDPSVDPTAATMFLERSKVE-NGGMTRKRSQQQIAQQAGSGGG 137

Query: 459 ---------------------LKKSSSCSTIYLXDSTVSQPNLKNTVRCVALAIYYHIXN 575
                                +KKSSSCSTIYL DSTVSQPNLKNTV+CV+LAIYYHI N
Sbjct: 138 GGGGGGGGSTPGGNSCGGGGGMKKSSSCSTIYLDDSTVSQPNLKNTVKCVSLAIYYHIKN 197

Query: 576 RMSDRXLHIFDEKLHPLSKEXVXD 647
           R SDR L IFDEKLHPL+ + V D
Sbjct: 198 RQSDRRLDIFDEKLHPLTHDQVPD 221



 Score = 31.9 bits (69), Expect = 0.77
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +3

Query: 198 MGNQNSCCCYRSPSPIRK 251
           MGN+NSCC Y SP   RK
Sbjct: 1   MGNKNSCCAYSSPQSDRK 18


>AE014134-2099|AAF53122.1|  406|Drosophila melanogaster CG14939-PA
           protein.
          Length = 406

 Score =  140 bits (340), Expect = 1e-33
 Identities = 80/144 (55%), Positives = 91/144 (63%), Gaps = 26/144 (18%)
 Frame = +3

Query: 294 SSNNIQHIXXREPDDGDIDPSQDPMAGTIFMERSKASIXNGMTRKRSQHQIADNK----- 458
           +  N+QHI  RE  +G+ DPS DP A T+F+ERSK     GMTRKRSQ QIA        
Sbjct: 79  NQQNLQHISEREALEGEEDPSVDPTAATMFLERSKVE-NGGMTRKRSQQQIAQQAGSGGG 137

Query: 459 ---------------------LKKSSSCSTIYLXDSTVSQPNLKNTVRCVALAIYYHIXN 575
                                +KKSSSCSTIYL DSTVSQPNLKNTV+CV+LAIYYHI N
Sbjct: 138 GGGGGGGGSTPGGNSCGGGGGMKKSSSCSTIYLDDSTVSQPNLKNTVKCVSLAIYYHIKN 197

Query: 576 RMSDRXLHIFDEKLHPLSKEXVXD 647
           R SDR L IFDEKLHPL+ + V D
Sbjct: 198 RQSDRRLDIFDEKLHPLTHDQVPD 221



 Score = 31.9 bits (69), Expect = 0.77
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +3

Query: 198 MGNQNSCCCYRSPSPIRK 251
           MGN+NSCC Y SP   RK
Sbjct: 1   MGNKNSCCAYSSPQSDRK 18


>DQ162845-1|ABA42953.1| 1715|Drosophila melanogaster TRF2 protein.
          Length = 1715

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
 Frame = +3

Query: 240 PIRKDIVKLEDYLPEGEVSSNNIQHIXXREPDDGDIDPSQDPMAGTIFMER---SKASIX 410
           P +K    LE   PE + S +  +     E   GD D   DP+ G +   R   ++    
Sbjct: 417 PNQKSDSSLESSSPERQDSESESRQASDEESSSGDSDYLIDPVTGWLSRRRETSTEREEK 476

Query: 411 NGMTRKRSQHQIADNKLKKS 470
           +  +++ S  +I D + ++S
Sbjct: 477 SDQSQQESSEEITDEQKEES 496


>BT003751-1|AAO41415.1|  286|Drosophila melanogaster RH56454p
           protein.
          Length = 286

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 633 LCSKDEVSHQKYVTCGQTFYXLC 565
           +C +D V+H K + CG  F+  C
Sbjct: 167 ICREDMVNHSKKLPCGHIFHTTC 189


>AY060677-1|AAL28225.1|  626|Drosophila melanogaster GH11117p
           protein.
          Length = 626

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 633 LCSKDEVSHQKYVTCGQTFYXLC 565
           +C +D V+H K + CG  F+  C
Sbjct: 291 ICREDMVNHSKKLPCGHIFHTTC 313


>AE014297-4807|AAF57196.2|  626|Drosophila melanogaster CG1937-PA
           protein.
          Length = 626

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 633 LCSKDEVSHQKYVTCGQTFYXLC 565
           +C +D V+H K + CG  F+  C
Sbjct: 291 ICREDMVNHSKKLPCGHIFHTTC 313


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,208,554
Number of Sequences: 53049
Number of extensions: 508630
Number of successful extensions: 1063
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2744900550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)