Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_P07
(654 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 365 e-101
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 365 e-101
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 295 2e-80
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 241 2e-80
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 213 9e-56
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 213 9e-56
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 204 3e-53
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 134 7e-32
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 96 2e-20
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 96 2e-20
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 92 3e-19
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 92 3e-19
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 92 3e-19
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 61 8e-10
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 56 2e-08
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 56 2e-08
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 44 1e-05
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 43 2e-04
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 42 3e-04
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 39 0.004
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 39 0.004
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 39 0.004
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 37 0.011
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 36 0.019
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 35 0.058
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 34 0.077
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 34 0.077
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 31 0.71
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 28 5.0
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 28 5.0
AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical ... 28 5.0
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 6.7
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 365 bits (897), Expect = e-101
Identities = 173/196 (88%), Positives = 179/196 (91%)
Frame = +2
Query: 65 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVL 244
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTI KFEKEA EMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 245 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 424
DKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 425 GEFEXGISXNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPXFDEIXXEVSSYIKK 604
GEFE GIS NGQTREHALLA TLGVKQLIV NKMDSTEPP+SE F EI EVS +IKK
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKK 180
Query: 605 IGYNPXAVAFVPISGW 652
IGYNP AV FVPISG+
Sbjct: 181 IGYNPKAVPFVPISGF 196
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 365 bits (897), Expect = e-101
Identities = 173/196 (88%), Positives = 179/196 (91%)
Frame = +2
Query: 65 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVL 244
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTI KFEKEA EMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 245 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 424
DKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 425 GEFEXGISXNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPXFDEIXXEVSSYIKK 604
GEFE GIS NGQTREHALLA TLGVKQLIV NKMDSTEPP+SE F EI EVS +IKK
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKK 180
Query: 605 IGYNPXAVAFVPISGW 652
IGYNP AV FVPISG+
Sbjct: 181 IGYNPKAVPFVPISGF 196
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 295 bits (724), Expect = 2e-80
Identities = 138/149 (92%), Positives = 142/149 (95%)
Frame = +2
Query: 65 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVL 244
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTI KFEKEA EMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 245 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 424
DKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 425 GEFEXGISXNGQTREHALLAFTLGVKQLI 511
GEFE GIS NGQTREHALLA TLGVKQL+
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQLV 149
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 241 bits (590), Expect(2) = 2e-80
Identities = 111/117 (94%), Positives = 114/117 (97%)
Frame = +2
Query: 65 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVL 244
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTI KFEKEA EMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 245 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 415
DKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
Score = 76.2 bits (179), Expect(2) = 2e-80
Identities = 35/49 (71%), Positives = 39/49 (79%)
Frame = +2
Query: 506 LIVXVNKMDSTEPPYSEPXFDEIXXEVSSYIKKIGYNPXAVAFVPISGW 652
L+V NKMDSTEPP+SE F EI EVS +IKKIGYNP AV FVPISG+
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGF 162
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 213 bits (520), Expect = 9e-56
Identities = 104/194 (53%), Positives = 139/194 (71%), Gaps = 1/194 (0%)
Frame = +2
Query: 74 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKL 253
+K IN++V+GHVD+GKST GHL++ +D RTI KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 254 KAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 433
+ ERERG+T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEF
Sbjct: 227 EEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEF 286
Query: 434 EXGISXNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPXFDEIXXEVSSYI-KKIG 610
E G GQT+EHALL +LGV QLIV VNK+D+ + +S+ FDEI +S ++ ++ G
Sbjct: 287 ETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEIKNNLSVFLTRQAG 344
Query: 611 YNPXAVAFVPISGW 652
++ FVP+SG+
Sbjct: 345 FSKP--KFVPVSGF 356
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 213 bits (520), Expect = 9e-56
Identities = 104/194 (53%), Positives = 139/194 (71%), Gaps = 1/194 (0%)
Frame = +2
Query: 74 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKL 253
+K IN++V+GHVD+GKST GHL++ +D RTI KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 254 KAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 433
+ ERERG+T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEF
Sbjct: 245 EEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEF 304
Query: 434 EXGISXNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPXFDEIXXEVSSYI-KKIG 610
E G GQT+EHALL +LGV QLIV VNK+D+ + +S+ FDEI +S ++ ++ G
Sbjct: 305 ETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEIKNNLSVFLTRQAG 362
Query: 611 YNPXAVAFVPISGW 652
++ FVP+SG+
Sbjct: 363 FSKP--KFVPVSGF 374
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 204 bits (499), Expect = 3e-53
Identities = 92/195 (47%), Positives = 132/195 (67%), Gaps = 1/195 (0%)
Frame = +2
Query: 68 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLD 247
G K HIN+V +GHVD+GKST G L++ G +DKRT+ K+E+EA E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 248 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 427
ERE+G T+++ FET K + TI+DAPGH+ F+ NMI G +QAD AVL+++A G
Sbjct: 164 TNDEEREKGKTVEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRG 223
Query: 428 EFEXGISXNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPXFDEIXXEVSSYIKKI 607
EFE G GQTREH++L T GVK L++ VNKMD + E F EI +++ +++K+
Sbjct: 224 EFETGFDRGGQTREHSMLVKTAGVKHLVILVNKMDDPTVKWEEERFKEIEGKLTPFLRKL 283
Query: 608 GYNPXA-VAFVPISG 649
G+NP + +VP SG
Sbjct: 284 GFNPKTDITYVPCSG 298
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 134 bits (323), Expect = 7e-32
Identities = 61/67 (91%), Positives = 62/67 (92%)
Frame = +2
Query: 65 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVL 244
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTI KFEKEA EMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 245 DKLKAER 265
DKLK +
Sbjct: 61 DKLKVTK 67
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 96.3 bits (229), Expect = 2e-20
Identities = 67/189 (35%), Positives = 96/189 (50%), Gaps = 2/189 (1%)
Frame = +2
Query: 77 KTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDK 250
K ++N+ IGH+D GK+T T + + G K KF++ +DK
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAITRVQAKKGFAKHI--KFDE---------------IDK 85
Query: 251 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 430
K E++RGITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G
Sbjct: 86 GKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGV 145
Query: 431 FEXGISXNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPXFDEIXXEVSSYIKKIG 610
E QT+EH +LA +GVK + + +NK D E E D + E + G
Sbjct: 146 ME-------QTKEHLILAKQVGVKNMAIFINKADLVE----EDDLDLVEMEARELLSLHG 194
Query: 611 YNPXAVAFV 637
+N A +
Sbjct: 195 FNGDATPVI 203
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 96.3 bits (229), Expect = 2e-20
Identities = 67/189 (35%), Positives = 96/189 (50%), Gaps = 2/189 (1%)
Frame = +2
Query: 77 KTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDK 250
K ++N+ IGH+D GK+T T + + G K KF++ +DK
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAITRVQAKKGFAKHI--KFDE---------------IDK 85
Query: 251 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 430
K E++RGITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G
Sbjct: 86 GKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGV 145
Query: 431 FEXGISXNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPXFDEIXXEVSSYIKKIG 610
E QT+EH +LA +GVK + + +NK D E E D + E + G
Sbjct: 146 ME-------QTKEHLILAKQVGVKNMAIFINKADLVE----EDDLDLVEMEARELLSLHG 194
Query: 611 YNPXAVAFV 637
+N A +
Sbjct: 195 FNGDATPVI 203
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 92.3 bits (219), Expect = 3e-19
Identities = 67/183 (36%), Positives = 96/183 (52%), Gaps = 2/183 (1%)
Frame = +2
Query: 71 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDK 250
++K H+N+ IGHVD GK+T T I K A G KY + D
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTS------------AITKIL--ATSKGAKYRKYEDI-DN 89
Query: 251 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 430
E+ RGITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 90 APEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGP 149
Query: 431 FEXGISXNGQTREHALLAFTLGV--KQLIVXVNKMDSTEPPYSEPXFDEIXXEVSSYIKK 604
QTREH LLA +GV ++V +NK+D E P +E + + ++ + +
Sbjct: 150 MP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNE 199
Query: 605 IGY 613
GY
Sbjct: 200 FGY 202
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 92.3 bits (219), Expect = 3e-19
Identities = 67/183 (36%), Positives = 96/183 (52%), Gaps = 2/183 (1%)
Frame = +2
Query: 71 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDK 250
++K H+N+ IGHVD GK+T T I K A G KY + D
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTS------------AITKIL--ATSKGAKYRKYEDI-DN 90
Query: 251 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 430
E+ RGITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 91 APEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGP 150
Query: 431 FEXGISXNGQTREHALLAFTLGV--KQLIVXVNKMDSTEPPYSEPXFDEIXXEVSSYIKK 604
QTREH LLA +GV ++V +NK+D E P +E + + ++ + +
Sbjct: 151 MP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNE 200
Query: 605 IGY 613
GY
Sbjct: 201 FGY 203
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 92.3 bits (219), Expect = 3e-19
Identities = 67/183 (36%), Positives = 96/183 (52%), Gaps = 2/183 (1%)
Frame = +2
Query: 71 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDK 250
++K H+N+ IGHVD GK+T T I K A G KY + D
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTS------------AITKIL--ATSKGAKYRKYEDI-DN 90
Query: 251 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 430
E+ RGITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 91 APEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGP 150
Query: 431 FEXGISXNGQTREHALLAFTLGV--KQLIVXVNKMDSTEPPYSEPXFDEIXXEVSSYIKK 604
QTREH LLA +GV ++V +NK+D E P +E + + ++ + +
Sbjct: 151 MP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNE 200
Query: 605 IGY 613
GY
Sbjct: 201 FGY 203
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 60.9 bits (141), Expect = 8e-10
Identities = 47/148 (31%), Positives = 67/148 (45%)
Frame = +2
Query: 89 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERE 268
N ++ HVD GKST L+ CG + +K+ +LDKL+ ERE
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPG-----QKQ-------------MLDKLQVERE 85
Query: 269 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEXGIS 448
RGIT+ Y + +ID PGH DF + + D +L+VAA G
Sbjct: 86 RGITVKAQTAALRHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG------- 138
Query: 449 XNGQTREHALLAFTLGVKQLIVXVNKMD 532
QT + LAF + Q+I +NK+D
Sbjct: 139 VQAQTIANFWLAFEKNI-QIIPVINKID 165
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 56.4 bits (130), Expect = 2e-08
Identities = 39/113 (34%), Positives = 53/113 (46%)
Frame = +2
Query: 89 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERE 268
NI VI HVD+GK+T T L+Y G I A + KG+ V D L ERE
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAIHV---------AGHVDKGNT----VTDFLDIERE 73
Query: 269 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 427
RGIT+ A + + + +ID PGH DF + D V+++ G
Sbjct: 74 RGITVQSAAVNLDWKGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDGSAG 126
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 56.0 bits (129), Expect = 2e-08
Identities = 47/148 (31%), Positives = 65/148 (43%)
Frame = +2
Query: 89 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERE 268
NI + H+DSGK+T T ++Y G ID E+ +G +D + ER+
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRIDSM---------HEV-RGKDDVGATMDFMDLERQ 95
Query: 269 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEXGIS 448
RGITI A + + IID PGH DF + D AVL++ G G G+
Sbjct: 96 RGITIQSAATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG----GVQ 150
Query: 449 XNGQTREHALLAFTLGVKQLIVXVNKMD 532
T L + + I VNKMD
Sbjct: 151 SQTFTVNRQLARYNV---PFICFVNKMD 175
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 43.6 bits (98), Expect(2) = 1e-05
Identities = 38/108 (35%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Frame = +2
Query: 212 GKGSFKYAWVLDKLKAERERGITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQ 388
GK + A ++ A GIT I + E +K VT +D PGH F G
Sbjct: 168 GKTTLLDAMRNSQIAAGEFGGITQHIGAFSVELTKGRRVTFLDTPGHAAFASMRARGAKG 227
Query: 389 ADCAVLIVAAGTGEFEXGISXNGQTREHALLAFTLGVKQLIVXVNKMD 532
AD VL+VAA G E QT + A V QL+V VNK+D
Sbjct: 228 ADIVVLVVAADDGVKE-------QTAQSIKFAKDANV-QLVVAVNKID 267
Score = 23.0 bits (47), Expect(2) = 1e-05
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +2
Query: 92 IVVIGHVDSGKST 130
+ ++GHVD GK+T
Sbjct: 159 VTIMGHVDHGKTT 171
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 42.7 bits (96), Expect = 2e-04
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 13/134 (9%)
Frame = +2
Query: 65 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIXKF-------EKEAXEMGK 217
M +++ N+ VI HVD GKST T L+ K G I K +F ++ +
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKS 72
Query: 218 GSFKYAWVLDKLKAERERG----ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 385
+ + L+K E +G T+++ K + + + + +ID+PGH DF +
Sbjct: 73 TAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALG 132
Query: 386 QADCAVLIVAAGTG 427
D A+++V +G
Sbjct: 133 VTDGALVVVDCVSG 146
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 42.3 bits (95), Expect = 3e-04
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 13/134 (9%)
Frame = +2
Query: 65 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIXKF-------EKEAXEMGK 217
M +++ N+ VI HVD GKST T L+ K G I K +F ++ +
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKS 72
Query: 218 GSFKYAWVLDKLKAERERG----ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 385
+ + L+K E +G T+++ K + + + + +ID+PGH DF +
Sbjct: 73 TAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALR 132
Query: 386 QADCAVLIVAAGTG 427
D A+++V +G
Sbjct: 133 VTDGALVVVDCVSG 146
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 39.9 bits (89), Expect = 0.002
Identities = 40/153 (26%), Positives = 64/153 (41%), Gaps = 1/153 (0%)
Frame = +2
Query: 86 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAER 265
+N+ ++GHVDSGK+T T + E+G S A
Sbjct: 14 LNLGILGHVDSGKTTLT-------------------RRIAELGSTSAFDAHATSTTTDGI 54
Query: 266 ERGITIDIALWKFET-SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEXG 442
R T+D+ + S + +ID PGH I+ ++ ++ D A++I+ G
Sbjct: 55 RRN-TLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAG----- 108
Query: 443 ISXNGQTREHALLAFTLGVKQLIVXVNKMDSTE 541
QT EH LLA ++I+ +NK D E
Sbjct: 109 --IQPQTAEHLLLASKFCPNRVIIVLNKCDLAE 139
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 38.7 bits (86), Expect = 0.004
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Frame = +2
Query: 71 KEKTHI-NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLD 247
K HI N+ ++ HVD GK++ L+ I R G +Y +D
Sbjct: 15 KPAEHIRNVCLVAHVDHGKTSFADSLVSANAVISSRMA------------GKLRY---MD 59
Query: 248 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 412
+ E+ RGIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 60 SREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 38.7 bits (86), Expect = 0.004
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Frame = +2
Query: 71 KEKTHI-NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLD 247
K HI N+ ++ HVD GK++ L+ I R G +Y +D
Sbjct: 15 KPAEHIRNVCLVAHVDHGKTSFADSLVSANAVISSRMA------------GKLRY---MD 59
Query: 248 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 412
+ E+ RGIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 60 SREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 38.7 bits (86), Expect = 0.004
Identities = 47/169 (27%), Positives = 70/169 (41%), Gaps = 11/169 (6%)
Frame = +2
Query: 59 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKC---GGIDKRTIXKFEKEAXEMGKGSFK 229
P K+ + V+G+VD+GKST G L + G RT K E G+ S
Sbjct: 132 PPTEKDFIEARVAVVGNVDAGKSTLLGVLTHSALDDGRGAARTKLFRHKHEFESGRTSSV 191
Query: 230 YAWVL------DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS-- 385
+L + + +D + +K VT ID GH ++K I G +
Sbjct: 192 GNDILGFDVHGNIVNKPDPHNHNLDWVQIGSDCAK-LVTFIDLAGHEKYLKTTIFGMTGH 250
Query: 386 QADCAVLIVAAGTGEFEXGISXNGQTREHALLAFTLGVKQLIVXVNKMD 532
D +L++ A G G T+EH LA +L V +V V K+D
Sbjct: 251 MPDYTMLMIGANMGII-------GTTKEHLSLALSLHVPVYLV-VTKID 291
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 37.1 bits (82), Expect = 0.011
Identities = 21/85 (24%), Positives = 38/85 (44%)
Frame = +2
Query: 320 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEXGISXNGQTREHALLAFTLGV 499
+V+ +D PGH + M+ G + D A L+VA QT EH + +
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVAGNEP------CPQPQTSEHLAAVEIMQL 181
Query: 500 KQLIVXVNKMDSTEPPYSEPXFDEI 574
L++ NK+D + + +++I
Sbjct: 182 NHLMILQNKVDIIKESQARENYEQI 206
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 36.3 bits (80), Expect = 0.019
Identities = 53/183 (28%), Positives = 77/183 (42%), Gaps = 8/183 (4%)
Frame = +2
Query: 86 INIVVIGHVDSGKSTTTGHLIYKC--GGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKA 259
+ + V+G D GKST G L C G K I F + E+ G K + V + +
Sbjct: 169 VRLAVVGGCDVGKSTLCGVLTQGCLDDGNGKARIGIF-RFPHEVRTG--KTSSVCNDVIG 225
Query: 260 ERERGITIDIALWKF----ETSKYYVTIIDAPGHRDFIKNMITGTS--QADCAVLIVAAG 421
RG ++ A E S VT+ID G + K I G + A L+VAA
Sbjct: 226 FDNRGKLVNYAQNSLEEMVEKSSKLVTLIDLAGDAKYQKTTIHGLTGYTPHFACLVVAA- 284
Query: 422 TGEFEXGISXNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPXFDEIXXEVSSYIK 601
+ GI+ TREH L L + + V + KMD + +I +VS+ +
Sbjct: 285 ----DRGITW--ATREHLGLIAALNI-PMFVLITKMDLVD----RQGLKKIIKDVSNLVA 333
Query: 602 KIG 610
K G
Sbjct: 334 KAG 336
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 34.7 bits (76), Expect = 0.058
Identities = 46/170 (27%), Positives = 70/170 (41%), Gaps = 12/170 (7%)
Frame = +2
Query: 59 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKC---GGIDKRTIXKFEKEAXEMGKGSFK 229
P K+ + V+G+VD+GKST G L + G RT K E G+ S
Sbjct: 132 PPTEKDFIEARVAVVGNVDAGKSTLLGVLTHSALDDGRGAARTKLFRHKHEFESGRTSSV 191
Query: 230 YAWVL------DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ- 388
+L + + +D + +K VT ID GH ++K I G +
Sbjct: 192 GNDILGFDVHGNIVNKPDPHNHNLDWVQIGSDCAK-LVTFIDLAGHEIYLKTTIFGMHRP 250
Query: 389 --ADCAVLIVAAGTGEFEXGISXNGQTREHALLAFTLGVKQLIVXVNKMD 532
+ +L++ A G G T+EH LA +L V +V V K+D
Sbjct: 251 YARNYTMLMIGANMGII-------GTTKEHLSLALSLHVPVYLV-VTKID 292
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 34.3 bits (75), Expect = 0.077
Identities = 28/113 (24%), Positives = 47/113 (41%)
Frame = +2
Query: 89 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERE 268
N+ + GH+ GK+T L+ ++T +F + E F ++K +
Sbjct: 134 NVAIAGHLHHGKTTFLDCLM-------EQTHPEFYRA--EDADARFTDILFIEKQRGCSI 184
Query: 269 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 427
+ + I + Y + IID PGH +F M AD V++V A G
Sbjct: 185 KSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 34.3 bits (75), Expect = 0.077
Identities = 28/113 (24%), Positives = 47/113 (41%)
Frame = +2
Query: 89 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERE 268
N+ + GH+ GK+T L+ ++T +F + E F ++K +
Sbjct: 9 NVAIAGHLHHGKTTFLDCLM-------EQTHPEFYRA--EDADARFTDILFIEKQRGCSI 59
Query: 269 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 427
+ + I + Y + IID PGH +F M AD V++V A G
Sbjct: 60 KSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 31.1 bits (67), Expect = 0.71
Identities = 25/80 (31%), Positives = 35/80 (43%)
Frame = +2
Query: 329 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEXGISXNGQTREHALLAFTLGVKQL 508
IID PGH F G+S D A+L+V + G+ QT E +L G
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV-----DIMHGLEP--QTIE-SLKLLIKGKTPF 604
Query: 509 IVXVNKMDSTEPPYSEPXFD 568
++ +NK+D S P D
Sbjct: 605 VIALNKIDRLYEYESNPRKD 624
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 86 INIVVIGHVDSGKSTTT 136
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 167 DKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERE 268
+KR + EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 167 DKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERE 268
+KR + EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical
protein F14D2.15 protein.
Length = 299
Score = 28.3 bits (60), Expect = 5.0
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Frame = -3
Query: 508 ELFDTEGESEQGMLTGLTVXRDTXFEF-----TGTGSYDEHSAISLRGSCDH--VLDEIS 350
E + +E E G+ L V RD F + +GTGS + H ++R DH + +
Sbjct: 24 EHYTSEEEDHFGIKWWLRVTRDDQFLYVDLGKSGTGSTNFHGNFNVRVESDHGVISENFK 83
Query: 349 VSRSINDGNIVLASFELPESNIDCDTTLTLSL*FVQYPSI 230
S S +D E+P ++ C++ +L + +Y SI
Sbjct: 84 FSGSKSDA-------EIPSTSNRCESFKWSNLDYSKYLSI 116
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +2
Query: 323 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 418
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,374,554
Number of Sequences: 27780
Number of extensions: 246353
Number of successful extensions: 696
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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