Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_P07
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   386   e-109
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   374   e-106
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   272   2e-75
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   239   2e-65
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    34   0.001
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.1  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   2.6  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   3.4  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   4.5  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  386 bits (949), Expect = e-109
 Identities = 184/196 (93%), Positives = 185/196 (94%)
 Frame = +2

Query: 65  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVL 244
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTI KFEKEA EMGKGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 245 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 424
           DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT
Sbjct: 61  DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 120

Query: 425 GEFEXGISXNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPXFDEIXXEVSSYIKK 604
           GEFE GIS NGQTREHALLAFTLGVKQLIV VNKMDSTEPPYSE  F+EI  EVSSYIKK
Sbjct: 121 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKK 180

Query: 605 IGYNPXAVAFVPISGW 652
           IGYNP AVAFVPISGW
Sbjct: 181 IGYNPAAVAFVPISGW 196


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  374 bits (921), Expect = e-106
 Identities = 178/196 (90%), Positives = 182/196 (92%)
 Frame = +2

Query: 65  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVL 244
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTI KFEKEA EMGKGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 245 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 424
           DKLKAERERGITIDIALWKFET+KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 
Sbjct: 61  DKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGI 120

Query: 425 GEFEXGISXNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPXFDEIXXEVSSYIKK 604
           GEFE GIS NGQTREHALLAFTLGVKQLIV VNKMD T+PPYSE  F+EI  EVSSYIKK
Sbjct: 121 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDMTDPPYSEARFEEIKKEVSSYIKK 180

Query: 605 IGYNPXAVAFVPISGW 652
           IGYN  +VAFVPISGW
Sbjct: 181 IGYNTASVAFVPISGW 196


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  272 bits (667), Expect = 2e-75
 Identities = 130/139 (93%), Positives = 131/139 (94%)
 Frame = +2

Query: 236 WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 415
           WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA
Sbjct: 1   WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 60

Query: 416 AGTGEFEXGISXNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPXFDEIXXEVSSY 595
           AGTGEFE GIS NGQTREHALLAFTLGVKQLIV VNKMDSTEPPYSE  F+EI  EVSSY
Sbjct: 61  AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSY 120

Query: 596 IKKIGYNPXAVAFVPISGW 652
           IKKIGYNP AVAFVPISGW
Sbjct: 121 IKKIGYNPAAVAFVPISGW 139


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  239 bits (585), Expect = 2e-65
 Identities = 114/123 (92%), Positives = 115/123 (93%)
 Frame = +2

Query: 284 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEXGISXNGQT 463
           DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE GIS NGQT
Sbjct: 1   DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 60

Query: 464 REHALLAFTLGVKQLIVXVNKMDSTEPPYSEPXFDEIXXEVSSYIKKIGYNPXAVAFVPI 643
           REHALLAFTLGVKQLIV VNKMDSTEPPYSE  F+EI  EVSSYIKKIGYNP AVAFVPI
Sbjct: 61  REHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPI 120

Query: 644 SGW 652
           SGW
Sbjct: 121 SGW 123


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 34.3 bits (75), Expect = 0.001
 Identities = 26/70 (37%), Positives = 33/70 (47%)
 Frame = +2

Query: 323 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEXGISXNGQTREHALLAFTLGVK 502
           VT +D PGH  FI     G    D  VL+VAA  G  E       QT +   +A    V 
Sbjct: 195 VTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDGVKE-------QTLQSIEMAKDAKV- 246

Query: 503 QLIVXVNKMD 532
            +IV +NK+D
Sbjct: 247 PIIVAINKID 256



 Score = 25.4 bits (53), Expect = 0.48
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 77  KTHINIVVIGHVDSGKST 130
           K H  + ++GHVD GK+T
Sbjct: 143 KRHPIVTIMGHVDHGKTT 160


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +2

Query: 86  INIVVIGHVDSGKST 130
           INI  IGHV  GKST
Sbjct: 43  INIGTIGHVAHGKST 57


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 308 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 409
           T KYY    D P +  FIKN+   ++ +D   LI
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLI 327


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 308 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 409
           T KYY    D P +  FIKN+   ++ +D   L+
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLV 327


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 3   ILVGVYLGYYTQLCNP 50
           +LVG+ LG+  +L NP
Sbjct: 73  VLVGLILGFLGRLANP 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,530
Number of Sequences: 438
Number of extensions: 3040
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)