Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_P04
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    31   0.11 
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    26   4.2  
SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe...    25   9.7  

>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = +1

Query: 256 DVTLAAEGRLLQAHKLXLSVCSPYFQEMF-KMNPTQHPIVFLKDVSHSA--LRDLLQFMY 426
           D+  A +   + AHK  L+  S YF+  F K+ P++H I    +V H A     +L+++Y
Sbjct: 168 DIVFAGQYGRVFAHKFYLAARSSYFKSKFSKLGPSEHEI----EVKHFAKEFESILRYLY 223


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 44  KCVNVLCWEH*VIFFSNCFSYRNYKY 121
           KC+  L  +H  ++F NC  +RN+K+
Sbjct: 118 KCI--LRMDHHCMWFKNCVGFRNHKF 141


>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = -3

Query: 415 VISLLVQND*HLLKILSDVVLDSF*TFLENRENILIEXIYVLAITCLRQPTLRLRDLHAT 236
           V++L + N  H    +S V+       LEN +N L E  Y+  +    + + ++    AT
Sbjct: 144 VLNLGLMNQIHTFDEISGVITLDSGVILENADNFLAEKGYMFPLDLGAKGSCQVGGCAAT 203

Query: 235 -AGHESLLTY 209
            AG   LL Y
Sbjct: 204 AAGGLRLLRY 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,457,383
Number of Sequences: 5004
Number of extensions: 46625
Number of successful extensions: 117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)