Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_O22
(656 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 182 5e-47
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 180 2e-46
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 174 8e-45
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces... 28 1.4
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 27 2.4
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 4.2
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 26 5.5
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c... 25 9.6
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 25 9.6
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|... 25 9.6
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 182 bits (442), Expect = 5e-47
Identities = 88/172 (51%), Positives = 116/172 (67%)
Frame = +1
Query: 139 SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKXKREIFKRAEQYVKEYRIKERD 318
SK+ PES+LK + +++++ K + I KRAE Y EYR ER+
Sbjct: 10 SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAERE 69
Query: 319 EIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNK 498
+I L R+AR GNYYVP E KL FVIRIRGIN + PK RK++QL RL QINNGVFV+ NK
Sbjct: 70 QIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLLRLIQINNGVFVKFNK 129
Query: 499 ATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVXKRL 654
AT ML++ EPY+ +G PNLK+VREL+YKRGF K++ QRI ++ N+I+ L
Sbjct: 130 ATKEMLQVVEPYVTYGIPNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAAL 181
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 180 bits (437), Expect = 2e-46
Identities = 84/165 (50%), Positives = 113/165 (68%)
Frame = +1
Query: 160 PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKXKREIFKRAEQYVKEYRIKERDEIRLARQ 339
PES+LK + +++S+ K + I KRAE Y EYR ER++I LAR+
Sbjct: 16 PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARK 75
Query: 340 ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLR 519
AR GNY+VP E KL FV+RIRGIN + PK RK++QL RL QINNG+FV+ NKA ML+
Sbjct: 76 ARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLLRLLQINNGIFVKFNKAIKEMLQ 135
Query: 520 IAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVXKRL 654
+ EPY+ +G PN K+VREL+YKRGF K++ QRIP++ N+I+ L
Sbjct: 136 VVEPYVTYGIPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIEAAL 180
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 174 bits (424), Expect = 8e-45
Identities = 80/165 (48%), Positives = 113/165 (68%)
Frame = +1
Query: 160 PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKXKREIFKRAEQYVKEYRIKERDEIRLARQ 339
PE +LK ++ + ++ + K ++E FKRAE ++ YR +ER+ IRL R
Sbjct: 15 PEVLLKKRKVNERTRKERVEQAIAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNRS 74
Query: 340 ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLR 519
A+N+G+ +VP E KL FVIRI G+ + PK+RKVL+L RL +INN VFVR NKA MLR
Sbjct: 75 AKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLLRLSRINNAVFVRNNKAVAQMLR 134
Query: 520 IAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVXKRL 654
I EPY+ +G PNL SVREL+YKRGF K++GQRI ++ N+++ + L
Sbjct: 135 IVEPYVMYGIPNLHSVRELIYKRGFGKINGQRIALSDNALIEEAL 179
>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 224
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = +1
Query: 241 SAIKXKREIFKRAEQYVKEYRIKERDEIRLARQARNRGN 357
+++K REI ++ E+ +R+K ++ ++ + A N GN
Sbjct: 151 TSLKRNREIIEKEERSSFHFRVKPKNLDKVPKLAENEGN 189
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +1
Query: 340 ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRL 459
+ N+G YY G +AFV I G+ + SP++ LQL ++
Sbjct: 1133 SENKGMYY--GLLGIAFVA-IAGVTEFSPELNAKLQLVKM 1169
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 26.2 bits (55), Expect = 4.2
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = +1
Query: 274 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE 375
+A Q ++ + +RL N+ N+++PGE
Sbjct: 309 KATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 25.8 bits (54), Expect = 5.5
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 2/109 (1%)
Frame = +1
Query: 136 DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRS--SAIKXKREIFKRAEQYVKEYRIK 309
D ++PA+PE +K Q KR + S ++ K + ++ V+EY
Sbjct: 441 DENRIPALPE--VKQIIRVDDPSPSIRQGRKKRHAKRSGVEIKSNLEAKSND-VEEYDAF 497
Query: 310 ERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFR 456
+DEI + N N E + + + + Q+S + K LF+
Sbjct: 498 YKDEINCEVLSWNEQNPKASEERVVGYSLPSVNLQQISNQQLKFASLFK 546
>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 603
Score = 25.0 bits (52), Expect = 9.6
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +2
Query: 122 SKGRKTVRSCLLYQSQCSSIVRGERLFALGDYRLR*RGVLLPSRXRGKSSRGLNSTSR 295
S+G+ ++C L+Q+ C R R + + G+ LP + K G S R
Sbjct: 18 SRGQPRCQTCTLFQADCHYSNRARRKRLVQRSKETFGGITLPVKNIEKPEDGEESVQR 75
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 25.0 bits (52), Expect = 9.6
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -1
Query: 272 LKISLXFLMAEERLFSVTCNLLVRRASLLLRCLSTDSGTAGSFLLSSFPL 123
LK + L +E + + + NL+V+ +L + T G FL SS P+
Sbjct: 239 LKKAFTKLFSEPTMVNKSINLIVQARQQILSTAYLTALTRGDFLSSSRPI 288
>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 540
Score = 25.0 bits (52), Expect = 9.6
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 508 NMLRIAEPYI--AWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSI 639
N +I+ PY GYP +K + L YK KLS +PI + I
Sbjct: 35 NSTKISPPYSENVEGYPKVKIEKSLPYKYDNCKLS-ICVPIVTTCI 79
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,449,440
Number of Sequences: 5004
Number of extensions: 46260
Number of successful extensions: 114
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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