Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_O17
         (536 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    75   9e-15
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    72   5e-14
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    69   3e-13
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    27   1.8  
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar...    27   2.3  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    25   5.4  
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   9.5  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    25   9.5  

>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 74.5 bits (175), Expect = 9e-15
 Identities = 34/65 (52%), Positives = 49/65 (75%)
 Frame = +1

Query: 115 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLIT 294
           +S +ELA  YSALIL D+ + +T +K+ ++ KAA V VEP W  +FAKALEG ++++L+ 
Sbjct: 1   MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60

Query: 295 NIGSG 309
           NIGSG
Sbjct: 61  NIGSG 65


>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 72.1 bits (169), Expect = 5e-14
 Identities = 33/64 (51%), Positives = 48/64 (75%)
 Frame = +1

Query: 115 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLIT 294
           +S +ELA  YSALIL D+ + +T +K+ ++ KAA V VEP W  +FAKALEG ++++L+ 
Sbjct: 1   MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60

Query: 295 NIGS 306
           NIGS
Sbjct: 61  NIGS 64


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 69.3 bits (162), Expect = 3e-13
 Identities = 31/64 (48%), Positives = 47/64 (73%)
 Frame = +1

Query: 115 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLIT 294
           +S +ELA  Y+ALIL D+ + +T +K+ ++ KA  V VEP W  +FAKALEG ++++L+ 
Sbjct: 1   MSASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLL 60

Query: 295 NIGS 306
           NIGS
Sbjct: 61  NIGS 64


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = -1

Query: 71  KREQARLSSDNKEKQERRLCSE 6
           ++EQ RL  +N+EK++RR+ ++
Sbjct: 250 RQEQFRLERENREKEKRRIAAQ 271


>SPAC22F3.05c |alp41||ADP-ribosylation factor
           Alp41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 186

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
 Frame = +1

Query: 97  RSKLKMVSKAELACVYSALILVD-DDV--AVTGEKISTILKAAAVXVEPYWPGLFAKALE 267
           R+ L+ +   E     S L+L +  DV  A++ E+IS IL  +      +W      AL 
Sbjct: 103 RNTLQELLVEEKLLFTSILVLANKSDVSGALSSEEISKILNISKYK-SSHWRIFSVSALT 161

Query: 268 GINVRDLIT 294
           G+N++D I+
Sbjct: 162 GLNIKDAIS 170


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -1

Query: 155 MRAE*THANSAFDTIFS-FERASCRRP*LKREQARLSSDNKEKQER 21
           +R +  H      TI +  ER SCRRP L  +  RL ++  E+Q+R
Sbjct: 213 LRHQVMHCQPHLRTIVNAVERMSCRRPKLVPQATRL-TEVLERQQR 257


>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 315

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 79  GLRQLARSKLKMVSKAELACVYSAL 153
           G+ QL    + ++SKA+L C Y  L
Sbjct: 159 GMLQLDMPHVNILSKADLLCTYGTL 183


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 286 GHGH*CLPRLWRTDL 242
           G+G  CLP LWR D+
Sbjct: 402 GNGVQCLPLLWRQDI 416


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,719,876
Number of Sequences: 5004
Number of extensions: 28123
Number of successful extensions: 70
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)