Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_O17
         (536 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal pro...   104   4e-23
U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal prote...   101   4e-22
U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AF039044-5|AAG24123.1|  164|Caenorhabditis elegans Hypothetical ...    27   6.5  

>AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal
           protein, acidic protein 1 protein.
          Length = 111

 Score =  104 bits (250), Expect = 4e-23
 Identities = 47/66 (71%), Positives = 58/66 (87%)
 Frame = +1

Query: 112 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLI 291
           M S  ELACVY+ALIL DD+VA+TGEKI+T+LKAA V  EPYWPGLFAKALEG++V++LI
Sbjct: 1   MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLI 60

Query: 292 TNIGSG 309
           T++ SG
Sbjct: 61  TSVSSG 66


>U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal protein
           P1 homolog protein.
          Length = 111

 Score =  101 bits (241), Expect = 4e-22
 Identities = 46/66 (69%), Positives = 57/66 (86%)
 Frame = +1

Query: 112 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLI 291
           M S  ELACVY+ALIL DD+VA+TGEKI+T+LKAA V  EP WPGLFAKALEG++V++LI
Sbjct: 1   MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPNWPGLFAKALEGVDVKNLI 60

Query: 292 TNIGSG 309
           T++ SG
Sbjct: 61  TSVSSG 66


>U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical
           protein B0432.7 protein.
          Length = 621

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +1

Query: 136 CVYSALILVDDDVAVTGEKISTILKAAAVXVEPYWPGLFAKALEGINVRDLITNIGS 306
           C ++ L + DDD  +T +  + +L+   V      PG+   A  G NV +    IGS
Sbjct: 269 CTFNVLTIGDDDCMMTRQIAADLLRRLVVSESSTTPGVPTLASTGKNVLNYGFFIGS 325


>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 215  AAFKMVEIFSPVTATSSSTRMRAE*THANSAFDTIFS 105
            A   M EIFSPV++T+   R  +      S +DTI S
Sbjct: 2794 AGIPMDEIFSPVSSTADGNRRFSNFYEDRSGWDTIGS 2830


>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 215  AAFKMVEIFSPVTATSSSTRMRAE*THANSAFDTIFS 105
            A   M EIFSPV++T+   R  +      S +DTI S
Sbjct: 2794 AGIPMDEIFSPVSSTADGNRRFSNFYEDRSGWDTIGS 2830


>AF039044-5|AAG24123.1|  164|Caenorhabditis elegans Hypothetical
          protein F48G7.7 protein.
          Length = 164

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 8  PNITSFPVSLCCQNSNVLVLS 70
          PN T  P  LCC + +V ++S
Sbjct: 36 PNFTELPNGLCCSDDDVYIIS 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,660,729
Number of Sequences: 27780
Number of extensions: 167731
Number of successful extensions: 405
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)