Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_O09
         (427 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr...    31   0.46 
Z83238-1|CAB05792.1|  339|Caenorhabditis elegans Hypothetical pr...    27   5.6  
AF016672-8|AAB66117.4|  998|Caenorhabditis elegans Jnk interacti...    27   7.4  
Z82259-2|CAB05129.1|  474|Caenorhabditis elegans Hypothetical pr...    26   9.8  

>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical protein
            F30H5.3 protein.
          Length = 1599

 Score = 30.7 bits (66), Expect = 0.46
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +3

Query: 66   QSCTRAKCSITTHCRFSLPQINCHFAMTKNSNSQGSNTSAANAIALG-AMAVVAVGT 233
            + CT + C     C FS    N +   +K S    S + AAN  A G A+   + GT
Sbjct: 1424 KQCTASPCPSGYKCTFSKKSKNYYCCSSKASPGSSSGSGAANGCATGSALLFPSTGT 1480


>Z83238-1|CAB05792.1|  339|Caenorhabditis elegans Hypothetical
           protein T08G3.1 protein.
          Length = 339

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 68  ILYPCKVFHHNSLSFFVATNKLPFCDDQEF 157
           +LYP    H +S ++ V  N  PF   +EF
Sbjct: 60  LLYPASGLHSHSAAYIVYINNRPFDASKEF 89


>AF016672-8|AAB66117.4|  998|Caenorhabditis elegans Jnk interacting
           protein (scaffoldprotein) protein 1 protein.
          Length = 998

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -1

Query: 412 LMIYNIILLDSKHKRVHVSIILRTKLFFRCXMFXYY 305
           +++   +L++   + +HV I  R K FF+C MF ++
Sbjct: 891 IIVPQTVLMEISFRGIHV-IDKRRKNFFQCPMFDFF 925


>Z82259-2|CAB05129.1|  474|Caenorhabditis elegans Hypothetical
           protein C28D4.2 protein.
          Length = 474

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -3

Query: 149 GHRKMAIYLWQRKTTMSCDGTLCTGTRLKSETKLACRFTIHCHSPPI 9
           G R + +YL Q K   S   +  T  +L+ E      F  H HSP +
Sbjct: 245 GERPIEMYLTQAKVPKSDYPSTITVAQLERELNFVEFFLQHSHSPVV 291


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,599,671
Number of Sequences: 27780
Number of extensions: 185131
Number of successful extensions: 421
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)