Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_O04
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    93   2e-20
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.25 
SPBC83.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    25   7.0  
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    25   7.0  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    25   7.0  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    25   7.0  
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    25   9.3  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    25   9.3  

>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 93.5 bits (222), Expect = 2e-20
 Identities = 47/123 (38%), Positives = 65/123 (52%)
 Frame = +2

Query: 275 PAEPXNRKRAQKGAGGIKTLYHTKDIKFLLHEPIIWKLRELKVYQQKIRRARAQREYGKM 454
           P EP N+K+A KG+    T Y+TKDI++LLHEPI+ K RE KV+ +K+ +A  + E    
Sbjct: 44  PREPKNKKKANKGSTAPVTFYYTKDIQYLLHEPIVQKFREYKVFARKLSKALGKGELETA 103

Query: 455 RKFLRDYPEINIDHIVKERYPTFVXXXXXXXXXXXXXXXXSTFPSLKKVPRDQSFLCRRL 634
           ++     P  ++DHI+KERYPTF                 ST P   K+       C RL
Sbjct: 104 KRLEARKPTYSLDHIIKERYPTFHDALKDIDDALSMLFLFSTMPVTDKIGAATVANCERL 163

Query: 635 TVE 643
             E
Sbjct: 164 CAE 166



 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = +1

Query: 172 SGEGAQFMTRXXXXXXXXXXXXDFRRICILKGIYPRRTXKPKEGSK 309
           +G    ++TR            DFRRICILKG+YPR     K+ +K
Sbjct: 10  AGAARIYITRNQALKKLQLTLADFRRICILKGVYPREPKNKKKANK 55


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 526 NKRGVSFLYYVINVYFWIVPQKLS 455
           NK+G+S+   VI  + W+V QKLS
Sbjct: 278 NKKGLSYFKAVIRAFEWLVEQKLS 301


>SPBC83.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 161

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = -2

Query: 576 LNRKHNVRQSSKSRKASTNVGYLSFTM*SMFISG 475
           +NR H +R S +S +   +VG++ ++  + ++SG
Sbjct: 76  INRYHGLRFSRQSSQEYDSVGHILYSPITYYVSG 109


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 279 QNLXTERGLKKVQAESKHFITLK 347
           Q L T+  ++K +AE K+F+T+K
Sbjct: 460 QELITKFSVEKEKAEQKYFLTMK 482


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 185 APSPEEYFFFFLDTIVIVILVQKVICKGFLFSCIK 81
           AP PE YF     T++ + +    I   +L  CIK
Sbjct: 189 APPPESYFRTIKSTLLAISMFLGFITLTWLLRCIK 223


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 69  HIQLFNTTKQKTFTYYFLNKDNNHNGVQKEEEVFFRRRSSVYD 197
           +I + +  K       +LNK NN  G+ +E  +   + SSV+D
Sbjct: 241 YIHVVDLAKGHIAALNYLNKINNSEGMYREWNLGTGKGSSVFD 283


>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 219 FLKRCFSGHKLSSFSGRILLLLFGHHCDC 133
           F+K+C   +++  FS  +L   + H  DC
Sbjct: 635 FIKQCLKMNRVVDFSPYLLASGYSHRLDC 663


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 168 ILLLLFGHHCDCYPCSES 115
           I++LLF H  DCY  +ES
Sbjct: 56  IMVLLFTHIYDCYKTNES 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,743,350
Number of Sequences: 5004
Number of extensions: 57828
Number of successful extensions: 134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)