Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_O04
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0803 + 27829438-27829461,27829558-27829643,27829960-278300...    75   6e-14
07_01_0181 + 1274177-1274200,1274335-1276161,1276519-1277448,127...    29   4.1  
02_01_0177 + 1214226-1214294,1214707-1214794,1216095-1216308,121...    29   4.1  
07_03_1451 - 26623913-26624123,26624504-26624593,26624691-266249...    28   5.5  
02_01_0074 + 519401-519512,519513-519548,519647-519706,519785-51...    28   5.5  

>03_05_0803 +
           27829438-27829461,27829558-27829643,27829960-27830088,
           27830806-27830925,27831007-27831132,27831349-27831433,
           27831538-27831648,27832215-27832308,27832448-27832728,
           27832840-27832947,27833163-27833284,27833825-27834035,
           27834149-27834376,27834591-27834680
          Length = 604

 Score = 74.5 bits (175), Expect = 6e-14
 Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 2/119 (1%)
 Frame = +2

Query: 293 RKRAQKGAGGIKTLYHTKDIKFLLHEPIIWKLRELKVYQQKIRRARAQREYGKMRKFLRD 472
           R   +K  G  KT YH KDI FL H+P+I K RE+KV+++K+++A A++      + L  
Sbjct: 48  RDPKKKVEGNHKTYYHMKDIAFLAHDPLIEKFREIKVHRKKVKKAFAKKNKDLADRLLNR 107

Query: 473 YPEINIDHIVKERYPTFVXXXXXXXXXXXXXXXXSTFPSL--KKVPRDQSFLCRRLTVE 643
            P   +D ++ ERYPTFV                +  P++  ++V   +   CRRL+ E
Sbjct: 108 PPTYKLDRLILERYPTFVDALRDLDDCLTMVHLFAALPAVEGERVQVQRIHNCRRLSHE 166



 Score = 37.9 bits (84), Expect = 0.007
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +1

Query: 175 GEGAQFMTRXXXXXXXXXXXXDFRRICILKGIYPRRTXKPKEGSKR 312
           G  A+++TR             FR++CILKG++PR   K  EG+ +
Sbjct: 14  GNAAKYITRTKAVKYLQISLATFRKLCILKGVFPRDPKKKVEGNHK 59


>07_01_0181 +
           1274177-1274200,1274335-1276161,1276519-1277448,
           1278314-1278367
          Length = 944

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -1

Query: 514 VSFLYYVINVYFWIVPQKLSHLAIFSLCSCTTNFLLINL*FPQFP 380
           +  L++VI+  F + P  L H+ +     C  N LL+     Q+P
Sbjct: 297 LEILFHVISAQFDVNPSLLGHMPVNMWKKCVNNMLLVLDILQQYP 341


>02_01_0177 +
           1214226-1214294,1214707-1214794,1216095-1216308,
           1216413-1216738,1216860-1217013,1217377-1217438,
           1218078-1218133,1219456-1221279,1221775-1222698,
           1222855-1222866
          Length = 1242

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -1

Query: 514 VSFLYYVINVYFWIVPQKLSHLAIFSLCSCTTNFLLINL*FPQFP 380
           +  L++VI+  F + P  L H+ +     C  N LL+     Q+P
Sbjct: 611 LEILFHVISAQFDVNPSLLGHMPVNMWKKCVNNMLLVLDILQQYP 655


>07_03_1451 -
           26623913-26624123,26624504-26624593,26624691-26624920,
           26625692-26625794,26625908-26626150,26626263-26626352,
           26626537-26626808
          Length = 412

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -3

Query: 539 LAKHQQTWGIFPLLCDQCLFLDSPAKTFSSCHILA 435
           +A +++T G F  L D+C F DS +  F++ H L+
Sbjct: 297 IASNERTPGFFSPLSDRCDFSDSCSHGFTTAHGLS 331


>02_01_0074 +
           519401-519512,519513-519548,519647-519706,519785-519877,
           519968-520033,520146-520223,520300-520407,520478-520554,
           520632-520706,520792-520799,520981-521098,521199-521625,
           521627-521661
          Length = 430

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +3

Query: 87  TTKQKTFTYYFLNKDNNHNGVQKEEEVFFRRRSSVYDQKSSA*ETTTILERFQTYL-YFE 263
           T K++      LNK  + +G+Q  E+ + R RS + D K S+  ++T        L   +
Sbjct: 51  TAKKQQLIDLDLNKKISQSGLQLIEQNYNRTRSFIIDAKKSSTRSSTAQSGILKDLRERD 110

Query: 264 RNIPPQNLXTERGL 305
           +NI  + +  + GL
Sbjct: 111 KNIEKKTISKDEGL 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,212,170
Number of Sequences: 37544
Number of extensions: 312418
Number of successful extensions: 648
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)